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[minor] Better handling of skipping ERCC process

Open jackkamm opened this issue 4 years ago • 2 comments

The quantifyERCCs step should only happen when doing MSSPE sequencing, not ARTIC sequencing.

Currently, we de facto skip it for ARTIC -- in particular, we still run the process, but just create a dummy output. However it would be better to skip the process entirely.

A slight complication is that one of the downstream processes (computeStats) consumes the output of quantifyERCCs, which is why we created the dummy output instead of skipping the process entirely.

jackkamm avatar Jan 11 '21 21:01 jackkamm