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Published 20 hours ago • verified publisher icon cytoscape

Expand Network Import format

Open dotasek opened this issue 6 years ago • 2 comments

POST /v1/networks does not support the following formats:

  • [ ] BioPAX

  • [ ] XGMML

  • [ ] CSV/TSV/TXT

  • [ ] Excel

  • [ ] GML

  • [ ] GPML

  • [ ] GEXF

  • [ ] GraphML

  • [ ] NNF

  • [ ] OBO

  • [ ] PSI-MI 1

  • [ ] PSI-MI 2.5

  • [ ] SBML

  • [ ] SIF

  • [ ] Empty - should generate an empty network

Note that some of these (I'm looking at TSV/CSV) require unique parameters to function, which the current v1 endpoint does not support.

dotasek avatar Mar 15 '18 22:03 dotasek

This is related to #66 in that we're trying to do a lot of work with a file, stream, or url, AND support the existing JSON formats from the RESTful endpoints.

Getting this to make sense might be a struggle.

dotasek avatar Mar 15 '18 23:03 dotasek

This, along with #66, could be taken care of by using some of the code used in the drag and drop functionality.

dotasek avatar Mar 26 '18 22:03 dotasek