pycytominer
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Image based QC prior to aggregate_profiles
Are there any QC procedure that could be done prior to aggregating well.
In my case any images that have less cell dense region would create an artifact as the cells become larger and larger. I want to avoid those images from the aggregation steps.
Or is there any way to get the entire db to be covert to one data frame including all features and metadata?. This would be more usable for the QC and exclude identified outliers from db and perform the downstream aggregation and analysis?.