pycytominer icon indicating copy to clipboard operation
pycytominer copied to clipboard

Published 20 hours ago • verified publisher icon cytomining

Modular single cell ingest

Open gwaybio opened this issue 3 years ago • 1 comments

As currently defined in aggregate.py, the class AggregateProfiles() works using SQLite files only.

We have added parquet functionality in cytomining/cytominer-database#122 and are finalizing the addition in cytomining/cytominer-database#130.

The task in this issue is to develop a cyto_utils.single_cell_ingest_utils.py file that will automatically detect file type and convert to a dataframe for easy processing in by cells.py in #111

gwaybio avatar Dec 14 '20 14:12 gwaybio