pycytominer
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Modular single cell ingest
As currently defined in aggregate.py, the class AggregateProfiles()
works using SQLite files only.
We have added parquet
functionality in cytomining/cytominer-database#122 and are finalizing the addition in cytomining/cytominer-database#130.
The task in this issue is to develop a cyto_utils.single_cell_ingest_utils.py
file that will automatically detect file type and convert to a dataframe for easy processing in by cells.py
in #111