cvanderaa

I added `if (interactive())` to a few examples that opened my browser when running `R CMD check .` locally. I hope this solves the issue :crossed_fingers: I'll need some more...

The SCP citation is currently: ``` To cite the scp package in publications use: Vanderaa, Christophe, and Laurent Gatto. 2023. Revisiting the Thorny Issue of Missing Values in Single-Cell Proteomics....

Yes it's possible to add descriptions as citation headers. Here is a tentative state for the citation, I'm of course open to change: ```r citation("scp") ``` ``` To cite the...

Hello @shimin-chen, Thank you for your feedback. I agree with you that this is confusing. On top of your commet, I think we could also improve either the title of...

Hello Shimin, I'm happy you saw that I "solved" the annotation issue in the latest version. Well at least I tried to solve it, but as you correctly noticed, I...

This also implies creating subsetting functionality for `ScpModel` objects, which should be rather straightforward.

Sorry, you're right! It's subsetting the `SingleCellExperiment` :sweat_smile:

It makes indeed no sense to subset an `ScpModel` by cell as the estimated results depend on all cells. So when sub-setting an `SCE` by column, all `ScpModel` objects in...

Good points! For comments 1 and 2, a function to generate the identification table would be useful. Now that I think about it, this is easily implemented by providing an...

The points are solve by #41, but I still need to write some unit tests.