check list for common setback

[hsun3163]

1. inconsistance chromosome naming convention between phenotype_per_chrom list and plink_per_chrom_list, wonder how this happened.
2. File name too long... should real change the default naming convention of A+B
3. Memory issue. ~80G for tensorQTL?
4. sos issue should high light -n not works with -{j,q,c,s}
5. singularity issue: singularity_bind needed in csg.yml and .bashrc
6. Documentation issue: should clearout the parameters set for test MWE 6.1. i.e. PEER --N
7. Documentation issue: should highlight the phenotype_group requirement for leafcutter