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Published 20 hours ago • verified publisher icon ctmrbio

Add assembly stats summary to MultiQC report

Open b16joski opened this issue 7 years ago • 3 comments

To gather assembly stats.

b16joski avatar Feb 07 '18 12:02 b16joski

This could be implemented using the Quast module in MultiQC

thorellk avatar Mar 01 '18 12:03 thorellk

@thorellk hasn't this been included in the 3.0 release?

abhi18av avatar Jan 18 '21 23:01 abhi18av

Not really. The assembly summary stats file is output after the Shovill process but MultiQC does not yet have support for statswrapper.sh outputs. So either we have to add this functionality to MultiQC (it already has support for several other bbmap tools but not statswrapper) or change the tool used for assembly statistics. This would be an enhancement but is in no way necessary.

thorellk avatar Jan 19 '21 08:01 thorellk