phantasus
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Support for gene expression data sources
- [x] Microarray data from GEO with GEOquery package
- [x] RNA-seq data from ARCHS4
- [ ] Data from recount2 project (https://jhubiostatistics.shinyapps.io/recount/ and corresponding R package).
- [ ] Using EBI interface (http://www.ebi.ac.uk/fg/rnaseq/api/).
- [ ] Using supplementary files with expression (such as here: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66556).
- [ ] With Bioconductor ExperimentHub package.
- [x] Dee2 archive (https://academic.oup.com/gigascience/article/8/4/giz022/5426567 http://dee2.io).