phantasus
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Gene expression analysis methods to implement
- [x] Gene set enrichment with
fgsea. - [ ] Phenotype prediction (with
phenopredict?). - [x] Differential expression with limma and proper design matrix.
- [x] Differential expression with DESeq2.
- [x] Export to Shiny GAM.
- [x] Export to Enrichr.
- [ ] WGCNA clustering.
- [ ] Survival analysis.
Export to Shiny GAM #72 && ctlab/phantasus.js#38
Export to Enrichr ctlab/phantasus.js#44