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Gene expression analysis methods to implement

Open assaron opened this issue 8 years ago • 2 comments

  • [x] Gene set enrichment with fgsea.
  • [ ] Phenotype prediction (with phenopredict?).
  • [x] Differential expression with limma and proper design matrix.
  • [x] Differential expression with DESeq2.
  • [x] Export to Shiny GAM.
  • [x] Export to Enrichr.
  • [ ] WGCNA clustering.
  • [ ] Survival analysis.

assaron avatar Jul 12 '17 12:07 assaron

Export to Shiny GAM #72 && ctlab/phantasus.js#38

vlakam avatar Dec 01 '17 03:12 vlakam

Export to Enrichr ctlab/phantasus.js#44

vlakam avatar Dec 31 '17 05:12 vlakam