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Bug when changing size of volcano plot points

Open denklewer opened this issue 5 months ago • 0 comments

When I am changing size of the points in volcano plot they seem to be plotted with wrong coordinates if p-value is > 0

Steps to repropduce:

  1. Open dataset, perform lima
  2. Select several genes. add annotation which will represent points size (Edit/Annotate Selected rows). I used value 1 image
  3. Invert selection and annotate other genes with different size. (I used 0.1)
  4. Open original volcano plot (Tools/Plots/Volcano) image
  5. Specify size of the points to be read from the IFN field image
  6. Result plot will be looking like this image
  7. However after setting P value significance to 0 the positions of colored points are changed image
  8. Positions with value 0 seems to be more accurate according to label by selected check mark image

denklewer avatar Sep 14 '24 17:09 denklewer