metacherchant

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Number of environments

1

Hi, I am trying to look at the environment of different genes in many samples (>700). Currently there is a limit of 64 environments - is it possible to increase...

ljpike16

add

Mariyatm

Hi. Firstly, thanks for the great software! I use it regularly and have made a bioconda recipe for metacherchant so that it can integrate more easily with my workflows. I...

will-rowe

I would like to add metacherchant to Bioconda so could you please tag a release?

druvus

Syntax errors in metacherchant.sh

1

There appears to be something wrong in the `metacherchant.sh` script on lines 23 and 24. Not sure if this affects how it works (haven't tried it yet). ``` $ bash...

boulund

ERROR: Uncaught exception: java.lang.IllegalArgumentException: Incorrect nucleotide char: "Y"

3

metacherchant.sh --tool environment-finder \ --k 31 \ --coverage=5 \ --reads ../data/testOutput.fastq \ --seq /dataAndScripts/ARG.fasta \ --maxradius 2000 \ --output ../data/output \ --work-dir ../data/output/metacherchant_logs \ --maxkmers=100000 \ --bothdirs=False \ --chunklength=250 \...

quyho0944