LinSeed

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Error installing

9

I've been trying to install linseed via devtools in R but I cannot get it to work. At first the error was that my version of R was too old...

mooreann

Create LinseedObject

4

Hi I was wondering if you can give more details about how to create the LinseedObject? While I was trying to use the public data GSE50244, I ended up with...

meichendong

Weird cell proportions

6

Hi! I'm testing linseed on RNAseq dataset. And I run into issue where linseed predicted proportions in summary gives >1, like: sample1 sample2 sample3 Cell type 1 0.6073787 0.5740409 1.027164e+00...

pushtiks

Hello! Could you post a quick tutorial on how to format a linseed object?

2

Hello! I am working through the tutorial and I have my own RNA-seq data that I would like to process with linseed. Does the LinseedObject function require data be formatted...

methornton

Dear @konsolerr, Your tool is giving some good results but, I am getting an error when trying to calculate the significance of correlations using the lo$calculateSignificanceLevel(100) function. My input data...

ArashDepp007

There have been a couple of changes that meant that the plotProportions function was no longer working. I updated the toMatrix function to handle if objects have multiple classes (e.g....

ignatiusm

Error testing with example data

1

Hi, I get the following error trying the code on GitHub: Can you please help with this? ``` > library(linseed) lo session sessionInfo sessioninfo:: > sessionInfo() R version 4.2.3 (2023-03-15)...

sharvari14