Charles Tapley Hoyt issues

Results 536 issues of


                                            Charles Tapley Hoyt

Make installable with pip

It would be nice to be able to pip install this code, maybe even from PyPI.

Provide dockerfile

Would you please provide a dockerfile? This would make it much easier for others to use this code

Add HTML summary for better jupyter notebook output

Fix collapse algorithm on list abundances

Closes #480 - [x] Add first unit test (16c61f13) - [ ] Add more unit tests - [ ] Provide implementation

Add postgres and mysql container tests to GitHub Actions

https://docs.github.com/en/free-pro-team@latest/actions/guides/creating-postgresql-service-containers

Add default regex namespaces for all MIRIAM entries

As a follow-up to #450 and #451, it would be great to have a way to put BEL graphs in MongoDB that's directly callable in python using something like [`pymongo`](https://api.mongodb.com/python/current/tutorial.html)....

I/O

Add SBGN-ML importer

Closes #423 This PR introduces the `pybel.io.sbgnml` I/O module, which first consumes SBGN-ML and converts it into a facile JSON-like data structure (which is generally reusable) then reasons over it...

Jupyter notebook integration via cytoscape

https://blog.jupyter.org/interactive-graph-visualization-in-jupyter-with-ipycytoscape-a8828a54ab63 Thank god somebody else wants to maintain this code

Charles Tapley Hoyt