Charles Tapley Hoyt
Charles Tapley Hoyt
A question I posed on [Slack](https://obo-communitygroup.slack.com/archives/C04FC8R3Y1K/p1727336334220449): Is there an OBI class that's appropriate for clinical trials? I've found [investigation (OBI:0000066)](https://www.ebi.ac.uk/ols4/ontologies/obi/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FOBI_0000066) which might be a good superclass. Here's what's also in...
There are several tests that are very slow that make the entire Bioregistry testing suite take more than ten minutes. ``` 138.26s call tests/test_data_slow.py::TestDataSlow::test_prefix_map_priorities 134.00s call tests/test_contexts.py::TestContexts::test_obo_context 68.07s call tests/test_contexts.py::TestContexts::test_obo_converter...
Remove this https://github.com/biopragmatics/bioregistry/blob/772b11ac19ccb7d2a7b45cf50d5e74d483c4d141/src/bioregistry/app/templates/base.html#L30 And anywhere there is something like with `class="fa fa-`, like this https://github.com/biopragmatics/bioregistry/blob/772b11ac19ccb7d2a7b45cf50d5e74d483c4d141/src/bioregistry/app/templates/base.html#L74 we can switch to using bootstrap's built-in icons (https://icons.getbootstrap.com). In this instance, switch it to...
Closes #1209 Step towards #1199
Right now, this is done with Pydantic v1 code
```python from bioregistry import manager >>> manager.parse_iri('http://jaxmice.jax.org/strain/005012.html') ``` Should return `('jaxmice', '005012')` but instead returns `('jaxmice', '005012.html')`. The bioregistry's IRI parser is more sophisticated than what's given in the `curies`...
Pydantic v2 has been out for more than a year, and it's time to decide on a timeline for dropping cross-compatibility with Pydantic v1. We have to do this because...
This will keep it easier to maintain the packaging ecosystem, which is changing pretty rapidly. It also has the benefit that it switches from setup.cfg to pyproject.toml, which GitHub tracks...
0f3d4fbe9 is one of the last commits I made before I wasn't tracking changes during sabbatical. To see changes to all Python files made since then, run `git diff --name-only...
Closes #31