Update Makefile to fix local dev target and set Crossplane configuration

[fahedouch]

Description of your changes

Added variables to specify Crossplane and dependencies versions for better control. Updated kubectl apply to use server-side apply with the defined Crossplane version, ensuring consistency and compatibility.

I have:

• [x] Read and followed Crossplane's contribution process.
• [x] Run make reviewable to ensure this PR is ready for review.
• [ ] Added backport release-x.y labels to auto-backport this PR if necessary.

How has this code been tested