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Alignments error while using `PairedGuideSet` object as input
Is it possible to run addSpacerAlignmentsIterative
on PairedGuideSet
object?! I an error running this code:
pairsGuideSet <- addSpacerAlignmentsIterative(
pairsGuideSet,
txObject=txdb,
aligner_index=bowtie_index,
bsgenome=bsgenome,
n_mismatches=2
)
R[write to console]: Error in METHOD(x, i) :
Subsetting operation on CompressedGRangesList object 'x' produces a
result that is too big to be represented as a CompressedList object.
Please try to coerce 'x' to a SimpleList object first (with 'as(x,
"SimpleList")').
Error in METHOD(x, i) :
Subsetting operation on CompressedGRangesList object 'x' produces a
result that is too big to be represented as a CompressedList object.
Please try to coerce 'x' to a SimpleList object first (with 'as(x,
"SimpleList")').
This is the size of my pairsGuideSet
:
PairedGuideSet object with 110196 pairs and 4 metadata columns: