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how to set the segmentation parameters when using CLAM to process datasets

Open jasonlightx opened this issue 2 months ago • 0 comments

seg_level,sthresh,mthresh,close,use_otsu,a_t,a_h,max_n_holes,vis_level,line_thickness,white_thresh,black_thresh,use_padding,contour_fn,keep_ids,exclude_ids

What are the values you have set for the above parameters?When segmenting WSI, to what extent is it reasonable? I observed that a large amount of light colored tissue was excluded from the JPG images in the Masks folder during segmentation. Is this reasonable?I would greatly appreciate it if you could answer my question

jasonlightx avatar Oct 24 '25 10:10 jasonlightx