TODO

[cpockrandt]

• [x] add clang support
• [x] add tests for gtf annotation to travis
• [ ] Option --dry: tells which species cannot be mapped. suggest which model is the best and outputs a --species string to speed up computation
• [x] weighted mean PhyloCSF scores instead of the mean score in annotation tools
• [ ] maf format: support tab-separation and missing scores (i.e. "a\n" lines)
• [ ] print output file path instead of just "Done"
• [ ] Check other libraries other than cblas, such as OpenBLAS

@martin-steinegger Can you look into this:

• [ ] FAQ in wiki for annotate-with-mmseqs
• [ ] add mmseqs params in phylocsf++ and forward them to mmseqs