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Published 20 hours ago • verified publisher icon cortex-lab

Output data of phy

Open linjianian opened this issue 3 years ago • 3 comments

Hi,

I would like to further analysis electrophysiological data after manually inspect by phy. Could you please tell me how can I output channel with largest amplitude and their trace of each cluster?

linjianian avatar Nov 22 '21 22:11 linjianian

I am also trying to use the data after passing througly Phy, would be nice to have it on the Docs.

cafalchio avatar Mar 16 '22 11:03 cafalchio

Hi @Acnowlogia , did you find a way? I am trying to input it back in python to plot waveforms.

cafalchio avatar Apr 12 '22 14:04 cafalchio

Hi @Acnowlogia , did you find a way? I am trying to input it back in python to plot waveforms.

I have choose other methods to process data.

If you want to plot waveforms. You may use readNPY in matlab (or directly use python) to read 'spike_templates.npy' which is generated by kilosort. Then you can find waveform of templates. Combining with 'spike_times.npy', 'spike_clusters.npy' and other .TSV file generated by Phy, you can draw the waveforms.

linjianian avatar Apr 18 '22 18:04 linjianian