KiloSort icon indicating copy to clipboard operation
KiloSort copied to clipboard

TemplateGuI kilosort waveform view issue

Open jnamgoon opened this issue 5 years ago • 4 comments

Hello, I am pretty new to Kilosort. I noticed that during manual spike sorting, when a single cluster is selected. some channels would appear empty on the waveform view, even when that channel was listed as showing highest activity. However, when the cluster is selected together with another cluster that shows highest activity on a channel of a different shank, the channel that was initially empty starts showing waves. I know that was phrased very badly so here is an example: This is a waveformview of a single cluster with highest activity supposedly at channel 51 channel 51

This is when the same cluster (right) is selected with another cluster (left) with supposed activity detected on the channel on a different shank of the electrode: channel 51 with 42

Thank you

jnamgoon avatar Feb 26 '20 21:02 jnamgoon

Have you installed the latest versions of phy and phylib?

rossant avatar Feb 27 '20 05:02 rossant

I believe so.

jnamgoon avatar Mar 04 '20 21:03 jnamgoon

The screenshots are from a slightly earlier version, you might need to reinstall phy and phylib. This particular bug was fixed

rossant avatar Mar 04 '20 22:03 rossant

We checked and reinstalled phy! I think the problem is fixed! Thank you so much!

jnamgoon avatar Mar 06 '20 17:03 jnamgoon