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Isolating Spikes

Open aproca opened this issue 5 years ago • 3 comments

How I would go about isolating individual sorted spikes of the real data (including its waveform, unit, and channel), rather than the templates or the average spikes. Is this in a specific .npy file(s)?

Thanks!

aproca avatar Jun 14 '19 20:06 aproca

Dear, I am looking for the same thing here. @aproca Did you found an easy way to do it ? :) Thanks

MarineChap avatar Jan 09 '20 13:01 MarineChap

Hi,

You can try this https://djoshea.github.io/neuropixel-utils/

You need to access the raw .bin file and get them from there. The link above should have enough info and worked examples.

PhantomSpike avatar Jan 09 '20 13:01 PhantomSpike

Aaah yes, I remember now seeing this during my research... But I don't have access to Matlab. So, I am only working in python with files given as output from kilosort. Thanks you. I will try to find a solution through these examples.

MarineChap avatar Jan 09 '20 14:01 MarineChap