Data Migration

[sainak]

Proposed Changes

• Lost of data migration logic
• More than 6k lines of code written with copilot and rewritten without it

Merge Checklist

• [ ] Tests added/fixed
• [ ] Update docs in /docs
• [ ] Linting Complete
• [ ] Any other necessary step

Only PR's with test cases included and passing lint and test pipelines will be reviewed

@ohcnetwork/care-backend-maintainers @ohcnetwork/care-backend-admins

Summary by CodeRabbit

Summary by CodeRabbit

• New Features

  • Enhanced data migration across core modules—including patient records, consultations, consents, prescriptions, daily rounds, and facility/asset management—improving data integrity and system reliability.
  • Expanded role-based access with new read-only roles for nurses, staff, and administrators.
  • Introduced a new configuration option to determine if the application is in a testing state.
  • Added support for tracking data migrations with a new MigrationTracking model.
  • Added new fields for migrated identifiers in various models, enhancing data tracking capabilities.

• Chores

  • Updated backend schemas and migration tracking processes, alongside utility improvements, to streamline operations and support future enhancements.

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📝 Walkthrough

Walkthrough

This pull request broadens the ignore pattern in the .gitignore file and introduces a skip directive in one EMR models file. Multiple migration scripts have been added or enhanced to handle data transformations and reverse operations for organizations, users, facilities, patient registrations and consultations, notes, prescriptions, symptoms, diagnoses, file uploads, daily rounds, assets, and consent records. Core models have been updated with new fields to track migrated EMR identifiers, and a new migration tracking model has been added. Additional utilities, role definitions, and testing configuration variables are also introduced. Quite the busy little update, isn’t it?

Changes

File(s)	Change Summary
.gitignore	Updated ignore pattern for care_db.dump from a fixed filename to a wildcard pattern (care_db.dump*).
care/emr/models/__init__.py	Added # isort: skip_file directive at the top to bypass import sorting.
care/facility/migrations/0477_*.py .../0491_migrate_consent_records.py	Multiple migration scripts updated/created to migrate organizations, users, facilities, patient registrations, consultations, notes, prescriptions, symptoms, diagnoses, file uploads, daily rounds, assets, and consent records, including new functions, reverse functions, and a new migration tracking model.
care/facility/models/{__init__.py, asset.py, bed.py, migration_tracking.py, patient.py, patient_consultation.py}	New fields for migrated EMR identifiers added in PatientRegistration, PatientNotes, Asset, Bed, AssetLocation, and PatientConsultation; added new model MigrationTracking and updated import and permission logic.
care/facility/utils.py	Introduced new utility functions enable_auto_time and disable_auto_time for managing automatic timestamping on models.
care/security/roles/role.py	Added new read-only roles (NURSE_READONLY_ROLE, STAFF_READONLY_ROLE, GEO_ADMIN_READONLY_ROLE) and updated role mapping logic for legacy roles.
config/settings/{base.py, test.py}	Added a new TESTING configuration variable (set to False in base and True in test settings).

Sequence Diagram(s)

sequenceDiagram
    participant M as Migration Script
    participant Q as Query/Pagination
    participant T as Transformation Logic
    participant DB as Database
    M->>Q: Fetch batch of records to migrate
    Q-->>M: Return records
    M->>T: Transform data for new schema
    T-->>M: Return transformed records
    M->>DB: Bulk insert/update transformed data
    DB-->>M: Confirm write
    M->>M: Log migration completion

Suggested Reviewers

• vigneshhari

Poem

In the maze of migrations our code took flight,
With fields and functions emerging in the night.
From rigid names to patterns set free,
Data sings its new migration melody.
A subtle nod (and a wink) to bugs left behind—
Cheers to changes, reformed and refined!

(May our migrations be as smooth as they are unavoidable.)

✨ Finishing Touches

🧪 Generate Unit Tests

• [ ] Create PR with Unit Tests
• [ ] Post Copyable Unit Tests in a Comment
• [ ] Commit Unit Tests in branch data-migration

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[codecov[bot]]

Codecov Report

:white_check_mark: All modified and coverable lines are covered by tests. :white_check_mark: Project coverage is 51.33%. Comparing base (05dd61f) to head (5d9e267). :warning: Report is 329 commits behind head on develop.

Additional details and impacted files

@@             Coverage Diff             @@
##           develop    #2763      +/-   ##
===========================================
+ Coverage    51.18%   51.33%   +0.14%     
===========================================
  Files          251      251              
  Lines        11403    11406       +3     
  Branches      1284     1285       +1     
===========================================
+ Hits          5837     5855      +18     
+ Misses        5545     5527      -18     
- Partials        21       24       +3     

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[!NOTE] Generated docstrings for this pull request at https://github.com/ohcnetwork/care/pull/2899

[sainak]

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