Cornelius Roemer
Cornelius Roemer
*Low severity* **Current Behavior** The build selector of nextstrain.org auspice does not show available groups and group types (`groups`/`community`) in contrast to how one would expect. **How to reproduce** Steps...
I think there's a minor typo in the README: > These antigenic data come in four flavors depending on the assay that passage history of the antigens. Should possibly be:...
### Description Both the `as_f64` and `as_opt_f64` (see #5) functions throw away information: - `as_f64` either coerces silently or errors the entire deserialization operation. - `as_opt_f64` errors less, but contains...
It would really help spot clusters if one could sort by breakpoint. sc2rf knows the rough location of the breakpoint, so the output should be possible to be sorted. If...
The analysis is one off at the moment, in order to see the result, I have to rerun the whole analysis. That's fine if analysing only 1000 samples or so,...
I think it could speed up the algorithm quite a bit if you accepted sequences in MAPLE format rather than fasta. Maple contains basically all the info you want, all...
If I understand your script correctly, you treat all mutations that are above the user specified threshold identical. There's room for improvement there. It would make sense to use two...
when I have 100 samples, the legend with gene boundaries goes out of screen. It would be nice if the legend could be repeated.
Alternative spacing between genes would be great so one can remember gene boundaries
It'd be super cool if the tool ran in a web browser. Drop (aligned) sequences and see it displayed. This may be not worth the probably not quite insignificant effort...