Bug: obtaining models from jws online db

[lilijap]

Hi @fbergmann, I've encountered this issue with Basico:

Description: Obtaining manuscript infromation from the models on JWS is not possible due to HTTP internal server error.

Steps to reproduce the issue:

1. run this code

import basico.jws_online as jws manuscript = jws.get_manuscript('bajaria1')

2. see the error

The respective manuscript is available here: https://jjj.mib.ac.uk/models/manuscripts/bajaria2002/

[fbergmann]

seems like JWS has changed their endpoint for retrieving Manuscript entries, I'll see whether that is still supported.

[fbergmann]

according to their implementation it is still:

^rest/ ^models/(?P<slug>[-\w]+)/manuscript/$
^rest/ ^models/(?P<slug>[-\w]+)/sbml/$

which is what basico uses, it currently gives an error code, but there is not much basico can do about it, this needs to be sorted at JWS site:

https://jjj.bio.vu.nl/rest/models/bajaria2002/manuscript/

[lilijap]

@fbergmann Thanks for your insights, Frank! Do you know who is maintaining this site? I'd like to reach out to the developers and let them know about this issue.

[fbergmann]

I've contacted the original authors and will let you know once I find out how to best proceed with this.