Lee Cooper

This addresses Issue #946. .features.graycomatrixext determines appropriate ranges for calculations based on image type, and converts the image to float after. Conversion to uint8 is not necessary and prevents these...

Document slicer_cli_web

1

Create documentation for an example algorithm being wrapped for HistomicsUI using slicer_cli_web, and integrate this into existing documentation.

TraceBounds infinite looping

1

TraceBounds becomes stuck in an infinite loop when labeling 8-connected objects with Connectivity=4.

Examine in-place versus copy operations.

Avoid unnecessary computation by calling with masks for select objects.

Functions for processing label images automatically condense the label image values to fill gaps for simplicity. This breaks the correspondence between the values of objects before and after calling the...

Boundary and feature formats

12

Define the formats to be produced by object segmentation and feature extraction. Boundaries - will need a function to convert a list of 2 x N arrays (x,y) to some...

[FEA] Support and apply ICC profile to the decompressed image

4

@gigony .svs images contain an ICC profile that is important for color standardization of these images. We see significant variability in color properties across scanner models and individual scanners when...

In the Assetstores management page for Girder, the host path should be displayed alongside the "Root path." The mapping of these root paths to the hosts currently requires inspecting the...