conda-package-handling
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20 hours ago •
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conda
Build error related to os.getcwd() on linux. Only works with --no-build-id
Checklist
- [X] I added a descriptive title
- [X] I searched open reports and couldn't find a duplicate
What happened?
When trying to build and upload pre-releases of my noarch python package ada-py on linux to my personal conda channel I keep seeing a repeating failure related to os.getcwd() in the conda_package_handling/interface.py. The same issue occurs when running locally on my WSL2 linux and on github actions. However, the issue disappears when adding the --no-build-id flag. There is no issue when running this on windows.
Before trying the --no-build-id option I tried a lot of different things (but without success):
- Changed the build and output directories.
- Switched between conda mambabuild and conda build
- Tried different pre-release tags and without;
0.0.38,0.0.38a1and0.0.38alpha.1which all produces the same issue - Tried with
--build-id-pat ''instead of--no-build-id. - Tried a different version of conda-build
3.23.3instead of3.23.4
As mentioned, I did finally get around the os.getcwd() issue by adding the --no-build-id flag, so my pipeline works for now. However I noticed in the docs that --no-build-id is deprecated and I should use --build-id-pat instead. Any suggestions of how I should use --build-id-pat to get the same effect as --no-build-id?
Any help with this would be greatly appreciated! Let me know if you need more information and I'll happily oblige,
Best Regards Kristoffer
Conda Info
active environment : base
active env location : /home/krande/mambaforge
shell level : 1
user config file : /home/krande/.condarc
populated config files : /home/krande/mambaforge/.condarc
conda version : 22.11.1
conda-build version : not installed
python version : 3.10.8.final.0
virtual packages : __archspec=1=x86_64
__glibc=2.35=0
__linux=5.10.16.3=0
__unix=0=0
base environment : /home/krande/mambaforge (writable)
conda av data dir : /home/krande/mambaforge/etc/conda
conda av metadata url : None
channel URLs : https://conda.anaconda.org/conda-forge/linux-64
https://conda.anaconda.org/conda-forge/noarch
package cache : /home/krande/mambaforge/pkgs
/home/krande/.conda/pkgs
envs directories : /home/krande/mambaforge/envs
/home/krande/.conda/envs
platform : linux-64
user-agent : conda/22.11.1 requests/2.28.2 CPython/3.10.8 Linux/5.10.16.3-microsoft-standard-WSL2 ubuntu/22.04.1 glibc/2.35
UID:GID : 1000:1000
netrc file : None
offline mode : False
Conda Config
==> /home/krande/mambaforge/.condarc <==
channels:
- conda-forge
Conda list
# packages in environment at /home/krande/mambaforge/envs/conda-build:
#
# Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 2_gnu conda-forge
anaconda-client 1.11.1 pyhd8ed1ab_0 conda-forge
anaconda-project 0.11.1 pyhd8ed1ab_0 conda-forge
anyio 3.6.2 pyhd8ed1ab_0 conda-forge
attrs 22.2.0 pyh71513ae_0 conda-forge
backports 1.0 pyhd8ed1ab_3 conda-forge
backports.functools_lru_cache 1.6.4 pyhd8ed1ab_0 conda-forge
beautifulsoup4 4.12.0 pyha770c72_0 conda-forge
boa 0.14.0 pyhd8ed1ab_4 conda-forge
brotlipy 0.7.0 py311hd4cff14_1005 conda-forge
bzip2 1.0.8 h7f98852_4 conda-forge
c-ares 1.18.1 h7f98852_0 conda-forge
ca-certificates 2022.12.7 ha878542_0 conda-forge
certifi 2022.12.7 pyhd8ed1ab_0 conda-forge
cffi 1.15.1 py311h409f033_3 conda-forge
chardet 5.1.0 py311h38be061_0 conda-forge
charset-normalizer 2.1.1 pyhd8ed1ab_0 conda-forge
click 8.1.3 unix_pyhd8ed1ab_2 conda-forge
clyent 1.2.2 py_1 conda-forge
colorama 0.4.6 pyhd8ed1ab_0 conda-forge
conda 23.1.0 py311h38be061_0 conda-forge
conda-build 3.24.0 py311h38be061_0 conda-forge
conda-pack 0.7.0 pyh6c4a22f_0 conda-forge
conda-package-handling 2.0.2 pyh38be061_0 conda-forge
conda-package-streaming 0.7.0 pyhd8ed1ab_1 conda-forge
conda-verify 3.1.1 py311h38be061_1006 conda-forge
cryptography 39.0.2 py311h9b4c7bb_0 conda-forge
dataclasses 0.8 pyhc8e2a94_3 conda-forge
defusedxml 0.7.1 pyhd8ed1ab_0 conda-forge
filelock 3.10.3 pyhd8ed1ab_0 conda-forge
fmt 9.1.0 h924138e_0 conda-forge
freetype 2.12.1 hca18f0e_1 conda-forge
future 0.18.3 pyhd8ed1ab_0 conda-forge
glob2 0.7 py_0 conda-forge
icu 72.1 hcb278e6_0 conda-forge
idna 3.4 pyhd8ed1ab_0 conda-forge
importlib-metadata 6.1.0 pyha770c72_0 conda-forge
importlib_resources 5.12.0 pyhd8ed1ab_0 conda-forge
jinja2 3.1.2 pyhd8ed1ab_1 conda-forge
joblib 1.2.0 pyhd8ed1ab_0 conda-forge
json5 0.9.5 pyh9f0ad1d_0 conda-forge
jsonschema 4.17.3 pyhd8ed1ab_0 conda-forge
jupyter_core 5.3.0 py311h38be061_0 conda-forge
keyutils 1.6.1 h166bdaf_0 conda-forge
krb5 1.20.1 h81ceb04_0 conda-forge
lcms2 2.15 haa2dc70_1 conda-forge
ld_impl_linux-64 2.40 h41732ed_0 conda-forge
lerc 4.0.0 h27087fc_0 conda-forge
libarchive 3.6.2 h3d51595_0 conda-forge
libcurl 7.88.1 hdc1c0ab_1 conda-forge
libdeflate 1.17 h0b41bf4_0 conda-forge
libedit 3.1.20191231 he28a2e2_2 conda-forge
libev 4.33 h516909a_1 conda-forge
libffi 3.4.2 h7f98852_5 conda-forge
libgcc-ng 12.2.0 h65d4601_19 conda-forge
libgomp 12.2.0 h65d4601_19 conda-forge
libiconv 1.17 h166bdaf_0 conda-forge
libjpeg-turbo 2.1.5.1 h0b41bf4_0 conda-forge
liblief 0.12.3 h27087fc_0 conda-forge
libmamba 1.4.0 hcea66bb_0 conda-forge
libmambapy 1.4.0 py311h1f88262_0 conda-forge
libnghttp2 1.52.0 h61bc06f_0 conda-forge
libnsl 2.0.0 h7f98852_0 conda-forge
libpng 1.6.39 h753d276_0 conda-forge
libsolv 0.7.23 h3eb15da_0 conda-forge
libsqlite 3.40.0 h753d276_0 conda-forge
libssh2 1.10.0 hf14f497_3 conda-forge
libstdcxx-ng 12.2.0 h46fd767_19 conda-forge
libtiff 4.5.0 hddfeb54_5 conda-forge
libuuid 2.32.1 h7f98852_1000 conda-forge
libwebp-base 1.3.0 h0b41bf4_0 conda-forge
libxcb 1.13 h7f98852_1004 conda-forge
libxml2 2.10.3 hfdac1af_6 conda-forge
libzlib 1.2.13 h166bdaf_4 conda-forge
lz4-c 1.9.4 hcb278e6_0 conda-forge
lzo 2.10 h516909a_1000 conda-forge
mamba 1.4.0 py311h3072747_0 conda-forge
markdown-it-py 2.2.0 pyhd8ed1ab_0 conda-forge
markupsafe 2.1.2 py311h2582759_0 conda-forge
mdurl 0.1.0 pyhd8ed1ab_0 conda-forge
nbformat 5.8.0 pyhd8ed1ab_0 conda-forge
ncurses 6.3 h27087fc_1 conda-forge
openjpeg 2.5.0 hfec8fc6_2 conda-forge
openssl 3.1.0 h0b41bf4_0 conda-forge
packaging 23.0 pyhd8ed1ab_0 conda-forge
patch 2.7.6 h7f98852_1002 conda-forge
patchelf 0.17.2 h58526e2_0 conda-forge
pillow 9.4.0 py311h573f0d3_2 conda-forge
pip 23.0.1 pyhd8ed1ab_0 conda-forge
pkginfo 1.9.6 pyhd8ed1ab_0 conda-forge
pkgutil-resolve-name 1.3.10 pyhd8ed1ab_0 conda-forge
platformdirs 3.1.1 pyhd8ed1ab_0 conda-forge
pluggy 1.0.0 pyhd8ed1ab_5 conda-forge
prompt-toolkit 3.0.38 pyha770c72_0 conda-forge
prompt_toolkit 3.0.38 hd8ed1ab_0 conda-forge
psutil 5.9.4 py311hd4cff14_0 conda-forge
pthread-stubs 0.4 h36c2ea0_1001 conda-forge
py-lief 0.12.3 py311ha362b79_0 conda-forge
pybind11-abi 4 hd8ed1ab_3 conda-forge
pycosat 0.6.4 py311hd4cff14_1 conda-forge
pycparser 2.21 pyhd8ed1ab_0 conda-forge
pygments 2.14.0 pyhd8ed1ab_0 conda-forge
pyopenssl 23.0.0 pyhd8ed1ab_0 conda-forge
pyrsistent 0.19.3 py311h2582759_0 conda-forge
pysocks 1.7.1 pyha2e5f31_6 conda-forge
python 3.11.0 he550d4f_1_cpython conda-forge
python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge
python-fastjsonschema 2.16.3 pyhd8ed1ab_0 conda-forge
python-libarchive-c 4.0 py311h38be061_2 conda-forge
python_abi 3.11 3_cp311 conda-forge
pytz 2022.7.1 pyhd8ed1ab_0 conda-forge
pyyaml 6.0 py311hd4cff14_5 conda-forge
readline 8.2 h8228510_1 conda-forge
reproc 14.2.4 h0b41bf4_0 conda-forge
reproc-cpp 14.2.4 hcb278e6_0 conda-forge
requests 2.28.2 pyhd8ed1ab_0 conda-forge
rich 13.3.2 pyhd8ed1ab_0 conda-forge
ripgrep 13.0.0 h2f28480_2 conda-forge
ruamel.yaml 0.17.21 py311h2582759_3 conda-forge
ruamel.yaml.clib 0.2.7 py311h2582759_1 conda-forge
ruamel_yaml 0.15.80 py311hd4cff14_1008 conda-forge
setuptools 65.6.3 pyhd8ed1ab_0 conda-forge
six 1.16.0 pyh6c4a22f_0 conda-forge
sniffio 1.3.0 pyhd8ed1ab_0 conda-forge
soupsieve 2.3.2.post1 pyhd8ed1ab_0 conda-forge
tk 8.6.12 h27826a3_0 conda-forge
toolz 0.12.0 pyhd8ed1ab_0 conda-forge
tornado 6.2 py311hd4cff14_1 conda-forge
tqdm 4.65.0 pyhd8ed1ab_1 conda-forge
traitlets 5.9.0 pyhd8ed1ab_0 conda-forge
typing-extensions 4.5.0 hd8ed1ab_0 conda-forge
typing_extensions 4.5.0 pyha770c72_0 conda-forge
tzdata 2022g h191b570_0 conda-forge
urllib3 1.26.15 pyhd8ed1ab_0 conda-forge
watchgod 0.8.2 pyhd8ed1ab_0 conda-forge
wcwidth 0.2.6 pyhd8ed1ab_0 conda-forge
wheel 0.40.0 pyhd8ed1ab_0 conda-forge
xorg-libxau 1.0.9 h7f98852_0 conda-forge
xorg-libxdmcp 1.1.3 h7f98852_0 conda-forge
xz 5.2.6 h166bdaf_0 conda-forge
yaml 0.2.5 h7f98852_2 conda-forge
yaml-cpp 0.7.0 h27087fc_2 conda-forge
zipp 3.15.0 pyhd8ed1ab_0 conda-forge
zstandard 0.19.0 py311hbe0fcd7_1 conda-forge
zstd 1.5.2 h3eb15da_6 conda-forge
Additional Context
Here are a few samples from my github action runs:
A failing run without --no-build-id -> here A working run with --no-build-id -> here
Here are the two main files for my ci workflow
Here is the output from the failing job
Packaging ada-py
INFO:conda_build.build:Packaging ada-py-0.0.38alpha.6-core_h37e0f91_100
Packaging ada-py-0.0.38alpha.6-core_h37e0f91_100
INFO:conda_build.utils:Renaming work directory '/tmp/conda_build/ada-py-0.0.38alpha.6_1679648175456/work' to '/tmp/conda_build/ada-py-0.0.38alpha.6_1679648175456/work_moved_ada-py-0.0.38alpha.6-core_h37e0f91_100_linux-64_main_build_loop'
number of files: 366
INFO:conda_build.utils:shutil.move(work)=/tmp/conda_build/ada-py-0.0.38alpha.6_1679648175456/work, dest=/tmp/conda_build/ada-py-0.0.38alpha.6_1679648175456/work_moved_ada-py-0.0.38alpha.6-core_h37e0f91_100_linux-64_main_build_loop)
Fixing permissions
INFO :: Time taken to mark (prefix)
0 replacements in 0 files was 0.03 seconds
Renaming work directory '/tmp/conda_build/ada-py-0.0.38alpha.6_1679648175456/work' to '/tmp/conda_build/ada-py-0.0.38alpha.6_1679648175456/work_moved_ada-py-0.0.38alpha.6-core_h37e0f91_100_linux-64_main_build_loop'
shutil.move(work)=/tmp/conda_build/ada-py-0.0.38alpha.6_1679648175456/work, dest=/tmp/conda_build/ada-py-0.0.38alpha.6_1679648175456/work_moved_ada-py-0.0.38alpha.6-core_h37e0f91_100_linux-64_main_build_loop)
Traceback (most recent call last):
File "/home/runner/micromamba-root/envs/conda-build/bin/anaconda", line 10, in <module>
sys.exit(main())
^^^^^^
File "/home/runner/micromamba-root/envs/conda-build/lib/python3.11/site-packages/binstar_client/scripts/cli.py", line 154, in main
binstar_main(command_module, args, _exit,
File "/home/runner/micromamba-root/envs/conda-build/lib/python3.11/site-packages/binstar_client/scripts/cli.py", line 123, in binstar_main
add_subparser_modules(parser, sub_command_module, 'conda_server.subcommand')
File "/home/runner/micromamba-root/envs/conda-build/lib/python3.11/site-packages/clyent/__init__.py", line 133, in add_subparser_modules
for command_module in get_sub_commands(module):
File "/home/runner/micromamba-root/envs/conda-build/lib/python3.11/site-packages/clyent/__init__.py", line 122, in get_sub_commands
this_module = __import__(module.__package__ or module.__name__, fromlist=names)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/runner/micromamba-root/envs/conda-build/lib/python3.11/site-packages/binstar_client/commands/update.py", line 17, in <module>
from binstar_client.utils.detect import detect_package_type, get_attrs
File "/home/runner/micromamba-root/envs/conda-build/lib/python3.11/site-packages/binstar_client/utils/detect.py", line 15, in <module>
from binstar_client.inspect_package.conda import inspect_conda_package
File "/home/runner/micromamba-root/envs/conda-build/lib/python3.11/site-packages/binstar_client/inspect_package/conda.py", line 12, in <module>
from conda_package_handling.api import extract
File "/home/runner/micromamba-root/envs/conda-build/lib/python3.11/site-packages/conda_package_handling/api.py", line 10, in <module>
from .interface import AbstractBaseFormat
File "/home/runner/micromamba-root/envs/conda-build/lib/python3.11/site-packages/conda_package_handling/interface.py", line 5, in <module>
class AbstractBaseFormat(metaclass=abc.ABCMeta):
File "/home/runner/micromamba-root/envs/conda-build/lib/python3.11/site-packages/conda_package_handling/interface.py", line 18, in AbstractBaseFormat
def create(prefix, file_list, out_fn, out_folder=os.getcwd(), **kw): # pragma: no cover
^^^^^^^^^^^
FileNotFoundError: [Errno 2] No such file or directory
And here is the output from a working job
Packaging ada-py
INFO:conda_build.build:Packaging ada-py-0.0.38alpha.7-core_h37e0f91_100
Packaging ada-py-0.0.38alpha.7-core_h37e0f91_100
INFO:conda_build.utils:Renaming work directory '/tmp/conda_build/work' to '/tmp/conda_build/work_moved_ada-py-0.0.38alpha.7-core_h37e0f91_100_linux-64_main_build_loop'
number of files: 366
INFO:conda_build.utils:shutil.move(work)=/tmp/conda_build/work, dest=/tmp/conda_build/work_moved_ada-py-0.0.38alpha.7-core_h37e0f91_100_linux-64_main_build_loop)
Fixing permissions
INFO :: Time taken to mark (prefix)
0 replacements in 0 files was 0.02 seconds
Renaming work directory '/tmp/conda_build/work' to '/tmp/conda_build/work_moved_ada-py-0.0.38alpha.7-core_h37e0f91_100_linux-64_main_build_loop'
shutil.move(work)=/tmp/conda_build/work, dest=/tmp/conda_build/work_moved_ada-py-0.0.38alpha.7-core_h37e0f91_100_linux-64_main_build_loop)
Using Anaconda API: https://api.anaconda.org/
Using "krande" as upload username
Processing '/tmp/conda_output/noarch/ada-py-0.0.38alpha.7-core_h37e0f91_100.tar.bz2'
Detecting file type...
File type is "Conda"
Extracting conda attributes for upload
Creating package "ada-py"
Creating release "0.0.38alpha.7"
Uploading file "krande/ada-py/0.0.38alpha.7/noarch/ada-py-0.0.38alpha.7-core_h37e0f91_100.tar.bz2"
Hi there, thank you for your contribution!
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