Biogeme

[FGarridoV]

Checklist

• [ ] Title of this PR is meaningful: e.g. "Adding my_nifty_package", not "updated meta.yaml".
• [ ] License file is packaged (see here for an example).
• [ ] Source is from official source.
• [ ] Package does not vendor other packages. (If a package uses the source of another package, they should be separate packages or the licenses of all packages need to be packaged).
• [ ] If static libraries are linked in, the license of the static library is packaged.
• [ ] Package does not ship static libraries. If static libraries are needed, follow CFEP-18.
• [ ] Build number is 0.
• [ ] A tarball (url) rather than a repo (e.g. git_url) is used in your recipe (see here for more details).
• [ ] GitHub users listed in the maintainer section have posted a comment confirming they are willing to be listed there.
• [ ] When in trouble, please check our knowledge base documentation before pinging a team.

[conda-forge-webservices[bot]]

Hi! This is the friendly automated conda-forge-linting service.

I just wanted to let you know that I linted all conda-recipes in your PR (recipes/biogeme, recipes/biogeme-optimization, recipes/cythonbiogeme) and found it was in an excellent condition.

[conda-forge-webservices[bot]]

Hi! This is the friendly automated conda-forge-linting service.

I just wanted to let you know that I linted all conda-recipes in your PR (recipes/biogeme) and found it was in an excellent condition.

[conda-forge-webservices[bot]]

Hi! This is the friendly automated conda-forge-linting service.

I wanted to let you know that I linted all conda-recipes in your PR (recipes/biogeme, recipes/biogeme-optimization, recipes/cythonbiogeme) and found some lint.

Here's what I've got...

For recipes/biogeme:

• There are too few lines. There should be one empty line at the end of the file.

For recipes/biogeme-optimization:

• There are too few lines. There should be one empty line at the end of the file.

For recipes/cythonbiogeme:

• There are too few lines. There should be one empty line at the end of the file.

[conda-forge-webservices[bot]]

Hi! This is the friendly automated conda-forge-linting service.

I wanted to let you know that I linted all conda-recipes in your PR (recipes/biogeme, recipes/biogeme-optimization, recipes/cythonbiogeme) and found some lint.

Here's what I've got...

For recipes/biogeme:

• There are too few lines. There should be one empty line at the end of the file.

For recipes/cythonbiogeme:

• There are too few lines. There should be one empty line at the end of the file.

[conda-forge-webservices[bot]]

Hi! This is the friendly automated conda-forge-linting service.

I just wanted to let you know that I linted all conda-recipes in your PR (recipes/biogeme, recipes/biogeme-optimization, recipes/cythonbiogeme) and found it was in an excellent condition.

[moorepants]

cythonbiogeme osx failure:

  In file included from /Users/runner/Miniforge3/conda-bld/cythonbiogeme_1716277750463/_build_env/bin/../include/c++/v1/__mbstate_t.h:45:
  /Applications/Xcode_14.2.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk/usr/include/sys/_types/_mbstate_t.h:31:9: error: unknown type name '__darwin_mbstate_t'
  typedef __darwin_mbstate_t mbstate_t;
          ^
  1 error generated.
  error: command '/Users/runner/Miniforge3/conda-bld/cythonbiogeme_1716277750463/_build_env/bin/clang++' failed with exit code 1
  error: subprocess-exited-with-error
  
  × python setup.py bdist_wheel did not run successfully.
  │ exit code: 1
  ╰─> See above for output.

[moorepants]

cythonbiogeme builds for me locally on linux with the suggested changes I made above.

[conda-forge-webservices[bot]]

Hi! This is the friendly automated conda-forge-linting service.

I wanted to let you know that I linted all conda-recipes in your PR (recipes/biogeme, recipes/biogeme-optimization, recipes/cythonbiogeme) and found some lint.

Here's what I've got...

For recipes/biogeme-optimization:

• The license item is expected in the about section.

[conda-forge-webservices[bot]]

Hi! This is the friendly automated conda-forge-linting service.

I just wanted to let you know that I linted all conda-recipes in your PR (recipes/biogeme, recipes/biogeme-optimization, recipes/cythonbiogeme) and found it was in an excellent condition.

[moorepants]

linux_64 failure:

 g++ -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /home/conda/staged-recipes/build_artifacts/cythonbiogeme_1716475747481/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/include -fPIC -O2 -isystem /home/conda/staged-recipes/build_artifacts/cythonbiogeme_1716475747481/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/include -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/conda/staged-recipes/build_artifacts/cythonbiogeme_1716475747481/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/include -fdebug-prefix-map=/home/conda/staged-recipes/build_artifacts/cythonbiogeme_1716475747481/work=/usr/local/src/conda/cythonbiogeme-1.0.2 -fdebug-prefix-map=/home/conda/staged-recipes/build_artifacts/cythonbiogeme_1716475747481/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho=/usr/local/src/conda-prefix -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /home/conda/staged-recipes/build_artifacts/cythonbiogeme_1716475747481/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/include -fPIC -Isrc/cythonbiogeme/cpp -Isrc/ -I/home/conda/staged-recipes/build_artifacts/cythonbiogeme_1716475747481/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.9/site-packages/numpy/core/include -I/home/conda/staged-recipes/build_artifacts/cythonbiogeme_1716475747481/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/include/python3.9 -c src/cythonbiogeme/cpp/bioDerivatives.cc -o build/temp.linux-x86_64-cpython-39/src/cythonbiogeme/cpp/bioDerivatives.o -std=c++11
  error: command 'g++' failed: No such file or directory

This builds fine for me locally on linux, so I'm a bit confused why this isn't finding one of the files. I guess it could be possible I have something installed locally that isn't present on the CI service (yet).

[moorepants]

g++ should be available, not sure why it isn't.

[moorepants]

Maybe this is overriding the proper path to g++:

if platform.system() == "Darwin":
    os.environ["CC"] = "clang++"
    os.environ["CXX"] = "clang++"
else:
    os.environ["CC"] = "g++"
    os.environ["CXX"] = "g++"

[moorepants]

For windows, in the github repo there is this:

https://github.com/michelbierlaire/cythonbiogeme/blob/main/setup.cfg

# For Windows
#extra_compile_args = -std=c++11 -DMS_WIN64
#extra_link_args = -static -std=c++11 -static-libstdc++ -static-libgcc -Bstatic -lpthread -mms-bitfields -mwindows -Wl,-Bstatic,--whole-archive -Wl,--no-whole-archive

But it seems removed in the pypi source tarball. We may need to patch to add those link args.

[sandervancranenburgh]

Regarding the license. Re: "I'm not sure we can actually distribute this package, given the license." I checked this with Michel Bierlaire (the developer of biogme). He is fine with us building the conda recipe for biogeme.

[moorepants]

There is an error in your patch:

Downloading https://pypi.io/packages/source/c/cythonbiogeme/cythonbiogeme-1.0.2.tar.gz
Extracting download
Applying patch: /home/conda/staged-recipes-copy/recipes/cythonbiogeme/setup.py.patch
Applying patch: /home/conda/staged-recipes-copy/recipes/cythonbiogeme/setup.py.patch with args:
['-Np0', '-i', '/tmp/tmp5rw7euwy/setup.py.patch.native', '--binary']
checking file setup.py
patch unexpectedly ends in middle of line
Reversed (or previously applied) patch detected!  Skipping patch.
1 out of 1 hunk ignored
Warning: failed to download source.  If building, will try again after downloading recipe dependencies.

[moorepants]

I emailed you a patch file that should be correct.

[moorepants]

osx error:

x86_64-apple-darwin13.4.0-clang -fno-strict-overflow -DNDEBUG -O2 -Wall -fPIC -O2 -isystem /Users/runner/Miniforge3/conda-bld/cythonbiogeme_1716985223014/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/include -fPIC -O2 -isystem /Users/runner/Miniforge3/conda-bld/cythonbiogeme_1716985223014/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/include -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -isystem /Users/runner/Miniforge3/conda-bld/cythonbiogeme_1716985223014/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/include -fdebug-prefix-map=/Users/runner/Miniforge3/conda-bld/cythonbiogeme_1716985223014/work=/usr/local/src/conda/cythonbiogeme-1.0.2 -fdebug-prefix-map=/Users/runner/Miniforge3/conda-bld/cythonbiogeme_1716985223014/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place=/usr/local/src/conda-prefix -D_FORTIFY_SOURCE=2 -isystem /Users/runner/Miniforge3/conda-bld/cythonbiogeme_1716985223014/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/include -mmacosx-version-min=10.9 -mmacosx-version-min=10.13 -Isrc/cythonbiogeme/cpp -Isrc/ -I/Users/runner/Miniforge3/conda-bld/cythonbiogeme_1716985223014/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.12/site-packages/numpy/core/include -I/Users/runner/Miniforge3/conda-bld/cythonbiogeme_1716985223014/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/include/python3.12 -c src/cythonbiogeme/cpp/bioDerivatives.cc -o build/temp.macosx-10.9-x86_64-cpython-312/src/cythonbiogeme/cpp/bioDerivatives.o -std=c++11
  In file included from src/cythonbiogeme/cpp/bioDerivatives.cc:10:
  In file included from /Users/runner/Miniforge3/conda-bld/cythonbiogeme_1716985223014/_build_env/bin/../include/c++/v1/iostream:43:
  In file included from /Users/runner/Miniforge3/conda-bld/cythonbiogeme_1716985223014/_build_env/bin/../include/c++/v1/ios:221:
  In file included from /Users/runner/Miniforge3/conda-bld/cythonbiogeme_1716985223014/_build_env/bin/../include/c++/v1/__ios/fpos.h:14:
  In file included from /Users/runner/Miniforge3/conda-bld/cythonbiogeme_1716985223014/_build_env/bin/../include/c++/v1/iosfwd:106:
  In file included from /Users/runner/Miniforge3/conda-bld/cythonbiogeme_1716985223014/_build_env/bin/../include/c++/v1/__std_mbstate_t.h:14:
  In file included from /Users/runner/Miniforge3/conda-bld/cythonbiogeme_1716985223014/_build_env/bin/../include/c++/v1/__mbstate_t.h:45:
  /Applications/Xcode_14.2.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk/usr/include/sys/_types/_mbstate_t.h:31:9: error: unknown type name '__darwin_mbstate_t'
  typedef __darwin_mbstate_t mbstate_t;
          ^
  1 error generated.
  error: command '/Users/runner/Miniforge3/conda-bld/cythonbiogeme_1716985223014/_build_env/bin/x86_64-apple-darwin13.4.0-clang' failed with exit code 1
  error: subprocess-exited-with-error

[moorepants]

Windows error:

"C:\Program Files\Microsoft Visual Studio\2022\Enterprise\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -Isrc/cythonbiogeme/cpp -Isrc/ -IC:\bld\cythonbiogeme_1716985290432\_h_env\Lib\site-packages\numpy\core\include -IC:\bld\cythonbiogeme_1716985290432\_h_env\include -IC:\bld\cythonbiogeme_1716985290432\_h_env\Include "-IC:\Program Files\Microsoft Visual Studio\2022\Enterprise\VC\Tools\MSVC\14.29.30133\include" "-IC:\Program Files\Microsoft Visual Studio\2022\Enterprise\VC\Auxiliary\VS\include" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.22621.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\\include\10.0.22621.0\\um" "-IC:\Program Files (x86)\Windows Kits\10\\include\10.0.22621.0\\shared" "-IC:\Program Files (x86)\Windows Kits\10\\include\10.0.22621.0\\winrt" "-IC:\Program Files (x86)\Windows Kits\10\\include\10.0.22621.0\\cppwinrt" "-IC:\Program Files (x86)\Windows Kits\NETFXSDK\4.8\include\um" -IC:\bld\cythonbiogeme_1716985290432\_h_env\Library\include -IC:\bld\cythonbiogeme_1716985290432\_h_env\Library\include /d1trimfile:C:\bld\cythonbiogeme_1716985290432\work /EHsc /Tpsrc/cythonbiogeme/cpp/validity_check.cc /Fobuild\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/validity_check.obj -std=c++11
  cl : Command line warning D9002 : ignoring unknown option '-std=c++11'
  validity_check.cc
  "C:\Program Files\Microsoft Visual Studio\2022\Enterprise\VC\Tools\MSVC\14.29.30133\bin\HostX64\x64\link.exe" /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO /LIBPATH:C:\bld\cythonbiogeme_1716985290432\_h_env\libs /LIBPATH:C:\bld\cythonbiogeme_1716985290432\_h_env /LIBPATH:C:\bld\cythonbiogeme_1716985290432\_h_env\PCbuild\amd64 "/LIBPATH:C:\Program Files\Microsoft Visual Studio\2022\Enterprise\VC\Tools\MSVC\14.29.30133\lib\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\NETFXSDK\4.8\lib\um\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.22621.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\\lib\10.0.22621.0\\um\x64" /LIBPATH:C:\bld\cythonbiogeme_1716985290432\_h_env\Library\lib /LIBPATH:C:\bld\cythonbiogeme_1716985290432\_h_env\Library\lib /EXPORT:PyInit_cythonbiogeme build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioDerivatives.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioExceptions.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioExprAnd.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioExprBelongsTo.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioExprConditionalSum.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioExprCos.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioExprDerive.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioExprDivide.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioExprDraws.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioExprElem.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioExprEqual.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioExprExp.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioExprFixedParameter.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioExprFreeParameter.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioExprGaussHermite.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioExprGreater.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioExprGreaterOrEqual.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioExprIntegrate.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioExprLess.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioExprLessOrEqual.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioExprLinearUtility.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioExprLiteral.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioExprLog.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioExprLogLogit.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioExprLogLogitFullChoiceSet.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioExprLogzero.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioExprMax.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioExprMin.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioExprMinus.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioExprMontecarlo.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioExprMultSum.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioExprNormalCdf.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioExprNotEqual.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioExprNumeric.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioExprOr.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioExprPanelTrajectory.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioExprPlus.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioExprPower.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioExprRandomVariable.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioExprSin.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioExprTimes.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioExprUnaryMinus.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioExprVariable.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioExpression.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioFormula.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioGaussHermite.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioGhFunction.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioMemoryManagement.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioNormalCdf.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioSeveralExpressions.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioSeveralFormulas.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioString.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioThreadMemory.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioThreadMemoryOneExpression.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioThreadMemorySimul.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/bioVectorOfDerivatives.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/biogeme.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/cythonbiogeme.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/evaluateExpressions.obj build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp/validity_check.obj /OUT:build\lib.win-amd64-cpython-312\cythonbiogeme\cythonbiogeme.cp312-win_amd64.pyd /IMPLIB:build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp\cythonbiogeme.cp312-win_amd64.lib -std=c++11
  LINK : warning LNK4044: unrecognized option '/std=c++11'; ignored
     Creating library build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp\cythonbiogeme.cp312-win_amd64.lib and object build\temp.win-amd64-cpython-312\Release\src/cythonbiogeme/cpp\cythonbiogeme.cp312-win_amd64.exp
  biogeme.obj : error LNK2001: unresolved external symbol __imp_pthread_join
  biogeme.obj : error LNK2001: unresolved external symbol __imp_pthread_create
  build\lib.win-amd64-cpython-312\cythonbiogeme\cythonbiogeme.cp312-win_amd64.pyd : fatal error LNK1120: 2 unresolved externals
  error: command 'C:\\Program Files\\Microsoft Visual Studio\\2022\\Enterprise\\VC\\Tools\\MSVC\\14.29.30133\\bin\\HostX64\\x64\\link.exe' failed with exit code 1120
  error: subprocess-exited-with-error

[moorepants]

It seems to be building cythonbiogeme on linux correctly but the CI is in a loop and keeps rebuilding it.

[moorepants]

This ended up being an error on linux:

nothing provides requested biogeme-optimization 0.0.5.*

not clear why it is search for 0.0.5

[moorepants]

@FGarridoV I sent you another patch by email.

[FGarridoV]

@FGarridoV I sent you another patch by email.

I should also change the version of the "biogeme-optimization ==0.0.5" ?

[moorepants]

I should also change the version of the "biogeme-optimization ==0.0.5" ?

If this version of biogeme requires 0.0.5 (exactly) then you should be building biogeme-optimization 0.0.5 in this recipe. If it requires 0.0.6 then you should build that. The recipe and the dependency pin should match in the two recipes.

[conda-forge-webservices[bot]]

Hi! This is the friendly automated conda-forge-linting service.

I wanted to let you know that I linted all conda-recipes in your PR (recipes/biogeme, recipes/biogeme-optimization, recipes/cythonbiogeme) and found some lint.

Here's what I've got...

For recipes/biogeme-optimization:

• License is not an SPDX identifier (or a custom LicenseRef) nor an SPDX license expression.

Documentation on acceptable licenses can be found here.

For recipes/cythonbiogeme:

• The top level meta key patches is unexpected

[moorepants]

You seem to have deleted the setup.py.patch you need both patches that I sent you.

[conda-forge-webservices[bot]]

Hi! This is the friendly automated conda-forge-linting service.

I just wanted to let you know that I linted all conda-recipes in your PR (recipes/biogeme, recipes/biogeme-optimization, recipes/cythonbiogeme) and found it was in an excellent condition.

[conda-forge-webservices[bot]]

Hi! This is the friendly automated conda-forge-linting service.

I wanted to let you know that I linted all conda-recipes in your PR (recipes/biogeme, recipes/biogeme-optimization, recipes/cythonbiogeme) and found some lint.

Here's what I've got...

For recipes/biogeme:

• requirements: run: biogeme-optimization == 0.0.5 should not contain a space between relational operator and the version, i.e. biogeme-optimization ==0.0.5

For recipes/biogeme-optimization:

• License is not an SPDX identifier (or a custom LicenseRef) nor an SPDX license expression.

Documentation on acceptable licenses can be found here.

[conda-forge-webservices[bot]]

Hi! This is the friendly automated conda-forge-linting service.

I just wanted to let you know that I linted all conda-recipes in your PR (recipes/biogeme, recipes/biogeme-optimization, recipes/cythonbiogeme) and found it was in an excellent condition.

[moorepants]

This is the error on linux:

checking file setup.py
patch unexpectedly ends in middle of line
Reversed (or previously applied) patch detected!  Skipping patch.
1 out of 1 hunk ignored
Warning: failed to download source.  If building, will try again after downloading recipe dependencies.
Error was: 
Command '['/opt/conda/bin/patch', '--no-backup-if-mismatch', '--batch', '-Np0', '-i', '/tmp/tmpazud9_jc/setup.py.patch.native', '--binary', '--dry-run']' returned non-zero exit status 1.
Traceback (most recent call last):
  File "/home/conda/staged-recipes-copy/.ci_support/build_all.py", line 261, in <module>
    build_all(os.path.join(root_dir, "recipes"), args.arch)
  File "/home/conda/staged-recipes-copy/.ci_support/build_all.py", line 151, in build_all
    build_folders(recipes_dir, folders, arch, channel_urls)
  File "/home/conda/staged-recipes-copy/.ci_support/build_all.py", line 207, in build_folders
    conda_build.api.build([recipe], config=get_config(arch, channel_urls))
  File "/opt/conda/lib/python3.10/site-packages/conda_build/api.py", line 250, in build
    return build_tree(
  File "/opt/conda/lib/python3.10/site-packages/conda_build/build.py", line 3638, in build_tree
    packages_from_this = build(
  File "/opt/conda/lib/python3.10/site-packages/conda_build/build.py", line 2419, in build
    try_download(m, no_download_source=False, raise_error=True)
  File "/opt/conda/lib/python3.10/site-packages/conda_build/render.py", line 779, in try_download
    raise RuntimeError(
RuntimeError: Failed to download or patch source. Please see build log for info.

The patches worked for me when I first sent them to you. I'm not sure what has changed.

[moorepants]

I just tested a linux build locally with the patch files that I emailed you and the build works fine. Are you modifying the patch files or using the wrong ones?