odp icon indicating copy to clipboard operation
odp copied to clipboard

"nan" being replaced in chromosome names

Open tbrown91 opened this issue 8 months ago • 0 comments

Hi, great work on this pipeline, I'm really enjoying playing around with it.

I came across a strange error when running the odp_nway_rbh script, where some chromosomes in the assembly were called "unanchor1-unanchor200". In the *.unwrapped.rbh file, the "nan" in the name was replaced with "None", so the rbh to ribbon plotting failed as it was looking for a chromosome called "uNonechor1".

It wasn't too much effort to manually correct the names in the .rbh file and I don't know how often people will come across this issue. I haven't had a look too deep into what is causing this. Maybe this is something you can see immediately.

All the best and many thanks for the pipeline.

Tom

tbrown91 avatar May 31 '24 11:05 tbrown91