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Definition of Positive and Negative is inconsistent with Fig 3 for 'Right' Alternative Terminal Exon Events

Open lzx325 opened this issue 3 years ago • 0 comments

According to the code of this member function of class ALTR in lib/event.py, https://github.com/comprna/SUPPA/blob/1c0ad912b71c29ce233be4b7269c4a44e62e751d/lib/event.py#L309-L319

Since neg2 > coord3 is guaranteed at L315, the right terminal exon of transcript lies to the left of the exon (neg2,neg3). Therefore, the variable transcript does not denote the isoform containing the 'black exon' in Figure 3. I think the rhs of L318 and L319 should be switched. Am I right?

lzx325 avatar May 29 '22 21:05 lzx325