Low m5C modification site number overlapped with m5c-atlas database

[baishengjun]

Hi,

I obtained around 22,000 m5C midification sites using CHEUI-solo model, and I overlapped it with m5C-atlas database, only 1786 overlapped site obtained. I wonder how can I adjust parmeters to get high overlapped site? or any tips should I attention ?

Thanks a lot, Bai

[EduEyras]

Hi Bai,

Did you use any cut-off for the probability? You can change that to get more predictions.

I hope this helps

Eduardo

On Sat, 14 Oct 2023 at 19:10, baishengjun @.***> wrote:

Hi,

I obtained around 22,000 m5C midification sites using CHEUI-solo model, and I overlapped it with m5C-atlas database, only 1786 overlapped site obtained. I wonder how can I adjust parmeters to get high overlapped site? or any tips should I attention ?

Thanks a lot, Bai

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