Regarding output of the m6A probability and stoichiometry command

[Proy321]

I was trying to execute the following command for the prediction of m6A probability and stoichiometry at every A nucleotide site in the reference transcriptome y using following command, but unfortunately the command executed with error(attached herewith). I need help regarding the same.

python3 ../scripts/CHEUI_predict_model2.py -i read_level_m6A_predictions_sorted.txt -m ../CHEUI_trained_models/CHEUI_m6A_model2.h5 -o site_level_m6A_predictions.txt

[EduEyras]

Hi,

Thanks for your message.

Could you please send us a copy of your command line?

Thanks

Eduardo

On Fri, 21 Jul 2023 at 15:58, Proy321 @.***> wrote:

I was trying to execute the following command for the prediction of m6A probability and stoichiometry at every A nucleotide site in the reference transcriptome y using following command, but unfortunately the command executed with error(attached herewith). I need help regarding the same.

[image: Screenshot (33)] https://user-images.githubusercontent.com/140142819/255085302-61952fb2-9494-4577-8f81-91fb642aef98.png [image: Screenshot (32)] https://user-images.githubusercontent.com/140142819/255085347-520a3122-2d9e-4b1b-aa41-d183fd14c664.png

python3 ../scripts/CHEUI_predict_model2.py -i read_level_m6A_predictions_sorted.txt -m ../CHEUI_trained_models/CHEUI_m6A_model2.h5 -o site_level_m6A_predictions.txt

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[EduEyras]

Sorry, I just saw it at the bottom of the page

python3 ../scripts/CHEUI_predict_model2.py -i read_level_m6A_predictions_sorted.txt -m ../CHEUI_trained_models/CHEUI_m6A_model2.h5 -o site_level_m6A_predictions.txt

The command looks ok to me. There seems to be an issue with your system not finding keras? Perhaps Akanksha might be able to help

Thanks

Eduardo

On Fri, 21 Jul 2023 at 16:10, Eduardo Eyras @.***> wrote:

Hi,

Thanks for your message.

Could you please send us a copy of your command line?

Thanks

Eduardo

On Fri, 21 Jul 2023 at 15:58, Proy321 @.***> wrote:

I was trying to execute the following command for the prediction of m6A probability and stoichiometry at every A nucleotide site in the reference transcriptome y using following command, but unfortunately the command executed with error(attached herewith). I need help regarding the same.

[image: Screenshot (33)] https://user-images.githubusercontent.com/140142819/255085302-61952fb2-9494-4577-8f81-91fb642aef98.png [image: Screenshot (32)] https://user-images.githubusercontent.com/140142819/255085347-520a3122-2d9e-4b1b-aa41-d183fd14c664.png

python3 ../scripts/CHEUI_predict_model2.py -i read_level_m6A_predictions_sorted.txt -m ../CHEUI_trained_models/CHEUI_m6A_model2.h5 -o site_level_m6A_predictions.txt

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[Proy321]

It would be nice if Akansha can guide me regarding the same.