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multi-threading in running model 1

Open rezarahman12 opened this issue 2 years ago • 0 comments

Hi CHEUI team,

I'm running the below cheui script for almost 24 hours with 28 CPU in HPC, however, it seems slow. Is there any way to specify CPU core as we can do in CHEUI preprocessing steps?

python /scratch/qbi/uqmrah19/CHEUI/scripts/CHEUI_predict_model1.py
-i /scratch/qbi/uqmrah19/CHEUI/cheui/ONT_Reza/cheui_analysis/ctrl1/out_A_signals+IDs.p/eventalign_signals+IDS.p
-m /scratch/qbi/uqmrah19/CHEUI/CHEUI_trained_models/CHEUI_m6A_model1.h5
-o ./read_level_m6A_predictions_WT_rep1.txt
-l WT_rep1

I appreciate your time.

Best regards Reza

rezarahman12 avatar Jul 05 '23 06:07 rezarahman12