user_guide
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common-workflow-language
The CWL v1.0 - v1.2 user guide
especially https://www.commonwl.org/v1.2/Workflow.html#Conditional_execution_(Optional) - [ ] mention version mixing; and explain when and how to use `cwl-upgrader`
In lesson 23 There are 3 cwl files. But every cwl files have just `outputs: []` Rabix Composer can not execute these cwl correctly. It shoud have something. For examle....
http://www.commonwl.org/user_guide/05-stdout/index.html The example shows how to capture stdout for a single tool to be output.txt. This example should also show how to rename the output file, or else having multiple...
Part of #219 These are recurrent questions about `cwltool` & CWL (the user guide being focused on `cwltool`, I think we can answer that in the guide). - [x] Can...
One recipe is to use https://babeljs.io/ ``` $ npm install -G @babel/core @babel/cli @babel/preset-env $ babel --presets @babel/preset-env some_javascript.js > some_javascript_es5.1.js ``` or ``` $ sudo apt install babeljs $...
https://www.commonwl.org/v1.0/CommandLineTool.html#DockerRequirement Not supported by cwltool when using the Singularity engine And `dockerFile` can't import files from inputs or other spruces for the Dockerfile `COPY` command
From https://github.com/common-workflow-language/user_guide/pull/189 - [ ] A follow up section indicating the use of pickValue to implement the patterns outlined in the proposal common-workflow-language/common-workflow-language#854 - [ ] Add the example code...
Here are a few things I found confusing as I went through the user guide: - On this page: https://www.commonwl.org/user_guide/07-containers/index.html it's confusing that the hello.js file is made on the...
``` cwl cwlVersion: v1.0 class: Workflow inputs: [] steps: generates_an_array: run: array_of_files.cwl in: {} out: [ an_array_of_files ] single_file_processor: run: only_one_file_input_tool.cwl in: raw_file: # this is type: File source: generates_an_array/an_array_of_files...