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common-workflow-language
Semantic Annotations for Linked Avro Data
Hello, I like your project very much as bridging the gap from AVRO to semantic. I would have a question, could you please help me with this one? We use...
Hi! Benten relies on the schema to create all the data structures needed to analyze CWL documents. I use the schema in `.json` format as generated by `--print-avro`. Any references...
https://www.biostars.org/p/383396/#394573 As far as I can tell, this isn't straightforward to do
A CWL1.0 tool is defined as: ``` class: CommandLineTool cwlVersion: v1.0 id: b baseCommand: - touch - blablai inputs: - id: input type: - "null" - type: array items: type:...
As pointed out in common-workflow-language/cwltool#444 using enum symbols with spaces will cause problems with generating RDF, as the spaces are not escaped. There are also problems with generating the JSON-LD...
to avoid situations like https://github.com/common-workflow-language/cwltool/pull/987#issuecomment-442741693 again Add as another task in `tox.ini` - [ ] 1. Check the diff, did we change/increment the prefix in `setup.py` & `Makefile`? (also check...
Attempting to roundtrip the following workflow: [topmed-alignment.cwl.txt](https://github.com/common-workflow-language/schema_salad/files/2182314/topmed-alignment.cwl.txt) Fails validation Roundtrip code ``` import cwlpy.cwlmodels as cwlmodels import ruamel.yaml as yaml import sys W1 = cwlmodels.load_document('topmed-alignment.cwl') yaml.dump(cwlmodels.save(W1), sys.stdout, Dumper=yaml.RoundTripDumper) ``` ```...
Update documentation to reflect the current master is v1.1-dev1 of metaschema, add changelog from 6ce2b9abe8adcbbd21833d266b2a278ba5b140c3
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Semantic Annotations for Linked Avro Data