--leave-tmpdir includes the input staging directories

[mr-c]

found while working with @RenskeW

[codecov[bot]]

Codecov Report

Merging #1674 (909e87e) into main (741f4e5) will decrease coverage by 11.24%. The diff coverage is 0.00%.

:exclamation: Current head 909e87e differs from pull request most recent head d258967. Consider uploading reports for the commit d258967 to get more accurate results

@@             Coverage Diff             @@
##             main    #1674       +/-   ##
===========================================
- Coverage   83.70%   72.47%   -11.24%     
===========================================
  Files          44       44               
  Lines        8133     8123       -10     
  Branches     2224     2138       -86     
===========================================
- Hits         6808     5887      -921     
- Misses        848     1746      +898     
- Partials      477      490       +13     

Impacted Files	Coverage Δ
cwltool/job.py	74.60% <0.00%> (-6.89%)	:arrow_down:

... and 29 files with indirect coverage changes

[kinow]

Sorry the delay. Tested with the example 15 from the user guide. Confirmed the directory is not deleted. Everything looking good! :+1: Thanks

cwltool --leave-tmpdir linkfile.cwl arguments-job.yml

[ltirrell]

wanted to bump this and see if it could be merged. it really helps with debugging and checking intermediate steps in workflows

[ltirrell]

sorry for another comment, but is there anything holding this back from being merged?

[kinow]

sorry for another comment, but is there anything holding this back from being merged?

I think something changed in the commits after I tested it. CI builds are failing now.

[mr-c]

GitHub Actions and other things are broken https://www.githubstatus.com/incidents/pr3498h3qkfy