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cannot install monocle3 on mi Mac

Open qimiaonnegliguo opened this issue 3 years ago • 0 comments

Hello! Thanks for your effort in this package. Unfortunately I met some difficulties during installing it on my m1 Mac.

ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' ld: warning: ignoring file arpack/dnapps.o, building for macOS-x86_64 but attempting to link with file built for unknown-arm64 ld: warning: ignoring file arpack/dmout.o, building for macOS-x86_64 but attempting to link with file built for unknown-arm64 ld: warning: ignoring file arpack/dgetv0.o, building for macOS-x86_64 but attempting to link with file built for unknown-arm64 ld: warning: ignoring file arpack/dnaup2.o, building for macOS-x86_64 but attempting to link with file built for unknown-arm64 ld: warning: ignoring file arpack/dnconv.o, building for macOS-x86_64 but attempting to link with file built for unknown-arm64 ld: warning: ignoring file arpack/dnaupd.o, building for macOS-x86_64 but attempting to link with file built for unknown-arm64 ld: warning: ignoring file arpack/dnaitr.o, building for macOS-x86_64 but attempting to link with file built for unknown-arm64 ld: warning: ignoring file arpack/dlaqrb.o, building for macOS-x86_64 but attempting to link with file built for unknown-arm64 ld: warning: ignoring file arpack/dneigh.o, building for macOS-x86_64 but attempting to link with file built for unknown-arm64 ld: warning: ignoring file arpack/dneupd.o, building for macOS-x86_64 but attempting to link with file built for unknown-arm64 ld: warning: ignoring file arpack/dsapps.o, building for macOS-x86_64 but attempting to link with file built for unknown-arm64 ld: warning: ignoring file arpack/dngets.o, building for macOS-x86_64 but attempting to link with file built for unknown-arm64 ld: warning: ignoring file arpack/dsconv.o, building for macOS-x86_64 but attempting to link with file built for unknown-arm64 ld: warning: ignoring file arpack/dseigt.o, building for macOS-x86_64 but attempting to link with file built for unknown-arm64 ld: warning: ignoring file arpack/dsesrt.o, building for macOS-x86_64 but attempting to link with file built for unknown-arm64 ld: warning: ignoring file arpack/dsaupd.o, building for macOS-x86_64 but attempting to link with file built for unknown-arm64 ld: warning: ignoring file arpack/dsgets.o, building for macOS-x86_64 but attempting to link with file built for unknown-arm64 ld: warning: ignoring file arpack/dsortc.o, building for macOS-x86_64 but attempting to link with file built for unknown-arm64 ld: warning: ignoring file arpack/dsortr.o, building for macOS-x86_64 but attempting to link with file built for unknown-arm64 ld: warning: ignoring file arpack/dsaup2.o, building for macOS-x86_64 but attempting to link with file built for unknown-arm64 ld: warning: ignoring file arpack/dsaitr.o, building for macOS-x86_64 but attempting to link with file built for unknown-arm64 ld: warning: ignoring file arpack/dvout.o, building for macOS-x86_64 but attempting to link with file built for unknown-arm64 ld: warning: ignoring file arpack/dstatn.o, building for macOS-x86_64 but attempting to link with file built for unknown-arm64 ld: warning: ignoring file arpack/dseupd.o, building for macOS-x86_64 but attempting to link with file built for unknown-arm64ld: warning: ignoring file arpack/dstqrb.o, building for macOS-x86_64 but attempting to link with file built for unknown-arm64

ld: warning: ignoring file arpack/ivout.o, building for macOS-x86_64 but attempting to link with file built for unknown-arm64 ld: warning: ignoring file arpack/dstats.o, building for macOS-x86_64 but attempting to link with file built for unknown-arm64 ld: warning: ignoring file arpack/second.o, building for macOS-x86_64 but attempting to link with file built for unknown-arm64 ld: warning: ignoring file arpack/wrap.o, building for macOS-x86_64 but attempting to link with file built for unknown-arm64 ld: warning: ignoring file /usr/local/gfortran/lib/libgfortran.dylib, building for macOS-x86_64 but attempting to link with file built for macOS-arm64 ld: warning: ignoring file /usr/local/gfortran/lib/libquadmath.dylib, building for macOS-x86_64 but attempting to link with file built for macOS-arm64

Finally this error was produced:

ERROR: loading failed

  • removing ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library/leidenbase’ Warning message: In i.p(...) : installation of package ‘/var/folders/35/lx3fm7691fg8h_p6py3fsmtr0000gn/T//Rtmp7yRzVb/file3449175f06c6/leidenbase_0.1.4.tar.gz’ had non-zero exit status

Actually I tried all the methods mentioned in the Github-Issues like re-installing gFortran, Xcode command line tool but no one worked.

I wonder whether you could give me some suggestions on how to change my settings to install monocle3.

The information about my pc is macOS 12.2(m1), R = 4.1.

I also used command line to install monocle3 and the following error occurred: Package libcxx conflicts for: r-monocle3 -> libcxx[version='>=11.1.0|>=9.0.1|>=4.0.1'] python=3.8 -> libcxx[version='>=10.0.0|>=4.0.1']

Really grateful for your help and please kindly inform me if other information is needed.

qimiaonnegliguo avatar Feb 05 '22 14:02 qimiaonnegliguo