too many input files (limit set to 500 at compile time)

[ZhuangZK]

I used cuffcompare to process 1000 files and get an error below:

Error: too many input files (limit set to 500 at compile time) (if you need to raise this limit set a new value for MAX_QFILES in gtf_tracking.h and recompile)

But I can't find the "MAX_QFILES" option in the gtf_tracking.h

How can I raise the limit of the input files?