versioning of packages

Open cmkobel opened this issue 3 years ago • 3 comments

Fix (fixate) versions for everything in the conda environments.

Sep 13 '22 10:09 cmkobel

Especially for snakemake which doesn't seem to be stable. Better to do manual supervised updates.

Sep 23 '22 12:09 cmkobel

The apptainer-compatible docker images are now fixated which partially solves the problem (for non-developers).

Sep 29 '23 11:09 cmkobel

Also, versions should be clearly observable by the user. Either in the log, the report or by calling asscom2 --version. Easest but also least transparent solution is to echo into the log. Like running prokka --version before starting the computation.

Oct 12 '23 07:10 cmkobel

Everything is fixed to major or minor version.

Jun 11 '24 09:06 cmkobel