Colin Diesh

If you are strongly in need of accurate histograms I would recommend looking into using a bigwig for your histogram. ``` [tracks.yourtrack] ... your config here ... histograms.storeClass=JBrowse/Store/SeqFeature/BigWig histograms.urlTemplate=coverage.bw ```...

I guess you have also said your are using REST based histograms so that is another alternative

Cool. Sorry about the trouble, I'll leave this open If you want to attach any test data for this issue to reproduce this (and if possible reproduce #1249) that would...

for actual rendering to image type thing, here's an example https://ourcodeworld.com/articles/read/38/how-to-capture-an-image-from-a-dom-element-with-javascript

I am just posting that link as a reference, not that it has been tested in jbrowse codebase currently

This seems slightly confusing. I can see the benefit of being able to quickly see the "replaced" base, but only doing it for the deleted feature seems strange. I am...

Here on the sample browser, there is a deletion (indicated by the '*'). And if i am folllowing, this would have a configuration to display the reference base? http://jbrowse.org/code/JBrowse-1.11.3/?loc=ctgA%3A3839..3890&tracks=DNA%2CTranscript%2Cvolvox_microarray_bw_density%2Cvolvox_microarray_bw_xyplot%2Cvolvox-sorted-vcf%2Cvolvox-sorted_bam_coverage%2Cvolvox-sorted_bam&data=sample_data%2Fjson%2Fvolvox&highlight=&tracklist=1&nav=1&overview=1

I was thinking perhaps a mouseover popup to show the deleted/inserted sequence would be nice. Would this work?

the work on https://github.com/GMOD/jbrowse/pull/795 revealed that the sequence of the deletion is actually embedded in the MD tag which makes it easier in most cases to get that data

Note that this could apply to SNPCoverage too, and could show insertions