cmapPy

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I am trying to parse the: 1-GSE70138_Broad_LINCS_Level3_INF_mlr12k_n345976x12328_2017-03-06.gctx.gz 2-GSE70138_Broad_LINCS_Level3_INF_mlr12k_n78980x22268_2015-06-30.gct.gz 3-GSE70138_Broad_LINCS_Level4_ZSPCINF_mlr12k_n113012x22268_2015-12-31.gct.gz files with: 1-GSE70138_Broad_LINCS_sig_info_2017-03-06.txt.gz or 2-GSE70138_Broad_LINCS_inst_info_2017-03-06.txt.gz metadata files. I am trying to make a subset of files to make the process possible...

ElyasMo

how I create a conda environment for cmapPy and python 3

1

Not sure if this useful for others / including in docs, but here's how I create a conda environment for cmapPy in python 3. I mention this b/c I have...

ghost

parse_gctx: don't sort returned values

6

Hi @oena @levlitichev I was thinking about doing a pull request where I modified parse_gctx to not return the dataframes sorted by index/column. The reason I propose this is if...

dllahr

code to compute connectivity score

3

Dear sir, Did you release the code to compute drug's connectivity score? I appreciate your reply. Regards

FADHLyemen

I am trying to parse a gctx project using the cmapPy functions but I keep getting the following error: `--------------------------------------------------------------------------- UnicodeDecodeError Traceback (most recent call last) [](https://localhost:8080/#) in () 2...

JManickam13

Hi, this is a relatively simple question but I noticed that the Use Cases 2 & 3 from the Clue.io website did not have examples on API use cases. I...

faithtyuan

pypi release

1

Hi, the pypi release is severely outdated with the current code. Would it be possible to make a release on pypi, please?

Zethson

I'm using write_gct to output a GCT file. GCT files normally have the following columns: name, description, sample1, sample2... But when I use write_gct, it has the following columns: id,...

jnedzel