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Cannot reproduce published data (level 4)

Open khr97 opened this issue 1 year ago • 1 comments

Dear CMap developers, I'm following the pipeline and cannot reproduce level 4 data from the uploaded level 3 data. In detail, I expected that within a plate the ZSPC values of a gene and inferred expression values of the gene would be plotted on a straight line, since median(X) and MAD(X) would be constant across a plate. However, I observed quite significant deviation of data points from trend line. Also, ZSPC values in uploaded level 4 data was different from the ZSPC values calculated manually by robust_zscore function. How should I interpret this? Am I missing some points? l3vsl4

khr97 avatar Aug 26 '24 05:08 khr97