clinicalml
errors in the examples
Hi, I am running a linux mint machine in a virtual enviroment.
(python27) andrewcz@andrewcz-PORTEGE-Z30t-B ~/cfrnet $ cd ~ (python27) andrewcz@andrewcz-PORTEGE-Z30t-B ~ $ export TF_BINARY_URL=https://storage.googleapis.com/tensorflow/linux/cpu/tensorflow-0.10.0-cp27-none-linux_x86_64.whl (python27) andrewcz@andrewcz-PORTEGE-Z30t-B ~ $ pip install --ignore-installed --upgrade $TF_BINARY_URL Collecting tensorflow==0.10.0 from https://storage.googleapis.com/tensorflow/linux/cpu/tensorflow-0.10.0-cp27-none-linux_x86_64.whl Using cached https://storage.googleapis.com/tensorflow/linux/cpu/tensorflow-0.10.0-cp27-none-linux_x86_64.whl Collecting six>=1.10.0 (from tensorflow==0.10.0) Using cached six-1.10.0-py2.py3-none-any.whl Collecting numpy>=1.8.2 (from tensorflow==0.10.0) Using cached numpy-1.12.1-cp27-cp27mu-manylinux1_x86_64.whl Collecting mock>=2.0.0 (from tensorflow==0.10.0) Using cached mock-2.0.0-py2.py3-none-any.whl Collecting wheel (from tensorflow==0.10.0) Downloading wheel-0.29.0-py2.py3-none-any.whl (66kB) 100% |████████████████████████████████| 71kB 1.9MB/s Collecting protobuf==3.0.0b2 (from tensorflow==0.10.0) Using cached protobuf-3.0.0b2-py2.py3-none-any.whl Collecting funcsigs>=1; python_version < "3.3" (from mock>=2.0.0->tensorflow==0.10.0) Downloading funcsigs-1.0.2-py2.py3-none-any.whl Collecting pbr>=0.11 (from mock>=2.0.0->tensorflow==0.10.0) Using cached pbr-3.0.0-py2.py3-none-any.whl Collecting setuptools (from protobuf==3.0.0b2->tensorflow==0.10.0) Using cached setuptools-35.0.2-py2.py3-none-any.whl Collecting packaging>=16.8 (from setuptools->protobuf==3.0.0b2->tensorflow==0.10.0) Using cached packaging-16.8-py2.py3-none-any.whl Collecting appdirs>=1.4.0 (from setuptools->protobuf==3.0.0b2->tensorflow==0.10.0) Using cached appdirs-1.4.3-py2.py3-none-any.whl Collecting pyparsing (from packaging>=16.8->setuptools->protobuf==3.0.0b2->tensorflow==0.10.0) Using cached pyparsing-2.2.0-py2.py3-none-any.whl Installing collected packages: six, numpy, funcsigs, pbr, mock, wheel, pyparsing, packaging, appdirs, setuptools, protobuf, tensorflow Successfully installed appdirs-1.4.3 funcsigs-1.0.2 mock-2.0.0 numpy-1.12.1 packaging-16.8 pbr-3.0.0 protobuf-3.0.0b2 pyparsing-2.2.0 setuptools-35.0.2 six-1.10.0 tensorflow-0.10.0 wheel-0.29.0 (python27) andrewcz@andrewcz-PORTEGE-Z30t-B ~ $ git clone https://github.com/clinicalml/cfrnet.git fatal: destination path 'cfrnet' already exists and is not an empty directory. (python27) andrewcz@andrewcz-PORTEGE-Z30t-B ~ $ git clone https://github.com/clinicalml/cfrnet.git Cloning into 'cfrnet'... remote: Counting objects: 100, done. remote: Total 100 (delta 0), reused 0 (delta 0), pack-reused 100 Receiving objects: 100% (100/100), 3.34 MiB | 596.00 KiB/s, done. Resolving deltas: 100% (42/42), done. Checking connectivity... done. (python27) andrewcz@andrewcz-PORTEGE-Z30t-B ~ $ ./example_ihdp.sh bash: ./example_ihdp.sh: No such file or directory (python27) andrewcz@andrewcz-PORTEGE-Z30t-B ~ $ cd cfrnet/ (python27) andrewcz@andrewcz-PORTEGE-Z30t-B ~/cfrnet $ ./example_ihdp.sh
Run 1 of 20:
p_alpha: 0 Training with hyperparameters: alpha=0, lambda=0.0001 Training data: data/ihdp_npci_1-100.train.npz Test data: data/ihdp_npci_1-100.test.npz Loaded data with shape [672,25] Defining graph...
Traceback (most recent call last):
File "cfr_net_train.py", line 428, in
tf.app.run()
File "/home/andrewcz/miniconda3/envs/python27/lib/python2.7/site-packages/tensorflow/python/platform/app.py", line 30, in run
sys.exit(main(sys.argv))
File "cfr_net_train.py", line 421, in main
run(outdir)
File "cfr_net_train.py", line 277, in run
CFR = cfr.cfr_net(x, t, y_, p, FLAGS, r_alpha, r_lambda, do_in, do_out, dims)
File "/home/andrewcz/cfrnet/cfr/cfr_net.py", line 25, in init
self.build_graph(x, t, y , p_t, FLAGS, r_alpha, r_lambda, do_in, do_out, dims)
File "/home/andrewcz/cfrnet/cfr/cfr_net.py", line 129, in _build_graph
h_rep_norm = h_rep / safe_sqrt(tf.reduce_sum(tf.square(h_rep), axis=1, keep_dims=True))
TypeError: reduce_sum() got an unexpected keyword argument 'axis'
Configuration used, skipping
Configuration used, skipping
Run 4 of 20:
p_alpha: 1 Training with hyperparameters: alpha=1, lambda=0.0001 Training data: data/ihdp_npci_1-100.train.npz Test data: data/ihdp_npci_1-100.test.npz Loaded data with shape [672,25] Defining graph...
Traceback (most recent call last):
File "cfr_net_train.py", line 428, in
Evaluating experiment results/example_ihdp...
Loading results from results/example_ihdp...
Found 0 experiment configurations.
Traceback (most recent call last):
File "evaluate.py", line 97, in
Im not sure whats going on . all the errors come when i try and run the shell example. Many thanks, Andrew
Hi,
Which version of TensorFlow are you using? It sounds like tf.reduce_sum does not have the "axis" argument.
The code has only been tested on TensorFlow 0.12.0-rc1.
Best, Fredrik
