Chris Barnes

Can't make a specification omelette without breaking a few implementation eggs...

> Introduce an ome key under which all the metadata goes +1 for this > Configurable chunk keys, e.g. c/1/2/3, c.1.2.3, 1/2/3 (current OME-Zarr default), 1.2.3 Is there any need...

I had a go at this but it seemed to drop some rows between pages.

In case it's helpful in other cases, there are a few public CATMAID instances at virtual fly brain (tools -> CATMAID). The L1EM instance is just the published data from...

Thanks for responding so quickly! I didn't expect such a rapid fix. I'm still having issues with that import, though: ``` In [1]: from babtest.babtest import BABTest --------------------------------------------------------------------------- ModuleNotFoundError Traceback...

I have a branch running with tox on travis https://travis-ci.org/clbarnes/babtest/builds/449090905 Locally, it fails with python 3.6 because of trouble locating libmkl_rt.so, which pymc needs, and on 3.7 because some of...

Done a little more digging: I think PyMC2 is incompatible python py3.7, because it defines a function called `await` which is a reserved name in 3.7+. Replacing PyMC across an...

This could at least be partially resolved by documenting the output format.

Vigra and nifty will need to be handled. I really wish there were a pip-installable equivalent of `vigra.VigraArray`, it's such a useful data structure and probably wouldn't be that hard...

Mentioned in #10: it's nice that conda reads setuptools' data for picking up dependencies, but there are a couple which are on conda but not setuptools, so attempting to install...