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Error runing MetaSanity

Open tpellegrinetti opened this issue 1 year ago • 0 comments

Hi there,

I'm having an issue while trying to run MetaSanity. I installed it via Conda following the instructions on the GitHub page, but I keep getting the following error message:

"Traceback (most recent call last): File "/home/thierry_bioinfo/works/bioinformatics_tools/MetaSanity/pipedm.py", line 4, in from MetaSanity.Accessories.program_caller import ProgramCaller ModuleNotFoundError: No module named 'MetaSanity.Accessories.program_caller' Traceback (most recent call last): File "/home/thierry_bioinfo/bin/MetaSanity", line 374, in subprocess.run( File "/usr/lib/python3.10/subprocess.py", line 524, in run raise CalledProcessError(retcode, process.args, subprocess.CalledProcessError: Command '['python3', '/home/thierry_bioinfo/works/bioinformatics_tools/MetaSanity/pipedm.py', 'PhyloSanity', '-d', 'genomes', '-o', 'out', '-c', 'PhyloSanity.ini', '-t', 'None', '-a']' returned non-zero exit status 1."

I'm not sure what the problem is, as the module 'MetaSanity.Accessories.program_caller' seems to exist. Could you please advise on how to fix this issue?

Thank you in advance for your help.

tpellegrinetti avatar May 07 '23 19:05 tpellegrinetti