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An improved version of JFLAP 7.0 to be used as a library as well as a command line tool.

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When I try to run the jar bundles with any FSA I always get the following error Exception in thread "main" java.lang.NoClassDefFoundError: org/w3c/dom/ls/DocumentLS at java.base/java.lang.ClassLoader.defineClass1(Native Method) at java.base/java.lang.ClassLoader.defineClass(ClassLoader.java:1016) at java.base/java.security.SecureClassLoader.defineClass(SecureClassLoader.java:151)...

`TMSimulator.simulateInput()` always returns false because it is calling `TMSimulator.isAccepted()` to check status. However, `TMSimulator.isAccepted()` always returns false and even states in a comment that it only exists as a formality...

Whenever I load a Finite State Automaton: `FiniteStateAutomaton automaton = (FiniteStateAutomaton)new XMLCodec().decode(new File("something.jff"), null);` I get the following error: ``` java.lang.AssertionError at edu.duke.cs.jflap.file.xml.AutomatonTransducer.addBlocks(AutomatonTransducer.java:217) at edu.duke.cs.jflap.file.xml.AutomatonTransducer.readBlocks(AutomatonTransducer.java:483) at edu.duke.cs.jflap.file.xml.AutomatonTransducer.readAutomaton(AutomatonTransducer.java:411) at edu.duke.cs.jflap.file.xml.AutomatonTransducer.fromDOM(AutomatonTransducer.java:402) at...