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How to fix it?Error in .local(exprMat, plotStats, nCores, mctype, keepZeroesAsNA, verbose, : unused argument (splitByBlocks = TRUE)

Open DocMonster77 opened this issue 2 years ago • 4 comments

pbmc3k.final <- irGSEA.score(object = pbmc3k.final, assay = "RNA",

  •                          slot = "data", seeds = 123, ncores = 5,
    
  •                          min.cells = 3, min.feature = 0,
    
  •                          custom = F, geneset = NULL, msigdb = T,
    
  •                          species = "Homo sapiens", category = "H",  
    
  •                          subcategory = NULL, geneid = "symbol",
    
  •                          method = c("AUCell", "UCell", "singscore","ssgsea"),
    
  •                          aucell.MaxRank = NULL, ucell.MaxRank = NULL,
    
  •                          kcdf = 'Gaussian')
    

Validating object structure Updating object slots Ensuring keys are in the proper strucutre Ensuring feature names don't have underscores or pipes Object representation is consistent with the most current Seurat version Calculate AUCell scores Error in .local(exprMat, plotStats, nCores, mctype, keepZeroesAsNA, verbose, : unused argument (splitByBlocks = TRUE)

DocMonster77 avatar Sep 10 '22 10:09 DocMonster77

This error occurs because of an update to the AUCell version. The updated AUCell adds the splitByBlocks parameter. You can uninstall the AUCell package and then install the latest version of AUCell, which will solve this problem.

chuiqin avatar Sep 11 '22 13:09 chuiqin

This error occurs because of an update to the AUCell version. The updated AUCell adds the splitByBlocks parameter. You can uninstall the AUCell package and then install the latest version of AUCell, which will solve this problem.

I have updated to the latest version, but it still reports an error

sugarballer avatar Sep 12 '22 06:09 sugarballer

This error occurs because of an update to the AUCell version. The updated AUCell adds the splitByBlocks parameter. You can uninstall the AUCell package and then install the latest version of AUCell, which will solve this problem.

I have updated to the latest version, but it still reports an error Can you provide the version of irGSEA? You may need to update irGSEA to the latest version.

chuiqin avatar Sep 12 '22 08:09 chuiqin

This error occurs because of an update to the AUCell version. The updated AUCell adds the splitByBlocks parameter. You can uninstall the AUCell package and then install the latest version of AUCell, which will solve this problem.

I have updated to the latest version, but it still reports an error

Hi, I met the same problem as you. Have you solved it?

Jiangmeling avatar Oct 17 '22 03:10 Jiangmeling