irGSEA
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How to fix it?Error in .local(exprMat, plotStats, nCores, mctype, keepZeroesAsNA, verbose, : unused argument (splitByBlocks = TRUE)
pbmc3k.final <- irGSEA.score(object = pbmc3k.final, assay = "RNA",
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slot = "data", seeds = 123, ncores = 5,
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min.cells = 3, min.feature = 0,
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custom = F, geneset = NULL, msigdb = T,
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species = "Homo sapiens", category = "H",
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subcategory = NULL, geneid = "symbol",
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method = c("AUCell", "UCell", "singscore","ssgsea"),
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aucell.MaxRank = NULL, ucell.MaxRank = NULL,
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kcdf = 'Gaussian')
Validating object structure Updating object slots Ensuring keys are in the proper strucutre Ensuring feature names don't have underscores or pipes Object representation is consistent with the most current Seurat version Calculate AUCell scores Error in .local(exprMat, plotStats, nCores, mctype, keepZeroesAsNA, verbose, : unused argument (splitByBlocks = TRUE)
This error occurs because of an update to the AUCell version. The updated AUCell adds the splitByBlocks parameter. You can uninstall the AUCell package and then install the latest version of AUCell, which will solve this problem.
This error occurs because of an update to the AUCell version. The updated AUCell adds the splitByBlocks parameter. You can uninstall the AUCell package and then install the latest version of AUCell, which will solve this problem.
I have updated to the latest version, but it still reports an error
This error occurs because of an update to the AUCell version. The updated AUCell adds the splitByBlocks parameter. You can uninstall the AUCell package and then install the latest version of AUCell, which will solve this problem.
I have updated to the latest version, but it still reports an error Can you provide the version of irGSEA? You may need to update irGSEA to the latest version.
This error occurs because of an update to the AUCell version. The updated AUCell adds the splitByBlocks parameter. You can uninstall the AUCell package and then install the latest version of AUCell, which will solve this problem.
I have updated to the latest version, but it still reports an error
Hi, I met the same problem as you. Have you solved it?