chromadb fails to install on Alma Linux 8.7 and python 3.9

[Giiiii0]

  Using cached hnswlib-0.7.0.tar.gz (33 kB)
  Installing build dependencies ... done
  Getting requirements to build wheel ... error
  error: subprocess-exited-with-error

  × Getting requirements to build wheel did not run successfully.
  │ exit code: 1
  ╰─> [51 lines of output]
      Traceback (most recent call last):
        File "/tmp/pip-build-env-eluyx7cn/overlay/lib64/python3.9/site-packages/numpy/core/__init__.py", line 23, in <module>
          from . import multiarray
        File "/tmp/pip-build-env-eluyx7cn/overlay/lib64/python3.9/site-packages/numpy/core/multiarray.py", line 10, in <module>
          from . import overrides
        File "/tmp/pip-build-env-eluyx7cn/overlay/lib64/python3.9/site-packages/numpy/core/overrides.py", line 6, in <module>
          from numpy.core._multiarray_umath import (
      ImportError: /tmp/pip-build-env-eluyx7cn/overlay/lib64/python3.9/site-packages/numpy/core/_multiarray_umath.cpython-39-x86_64-linux-gnu.so: failed to map segment from shared object

      During handling of the above exception, another exception occurred:

      Traceback (most recent call last):
        File "/usr/local/lib/python3.9/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 353, in <module>
          main()
        File "/usr/local/lib/python3.9/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 335, in main
          json_out['return_val'] = hook(**hook_input['kwargs'])
        File "/usr/local/lib/python3.9/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 118, in get_requires_for_build_wheel
          return hook(config_settings)
        File "/tmp/pip-build-env-eluyx7cn/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in get_requires_for_build_wheel
          return self._get_build_requires(config_settings, requirements=['wheel'])
        File "/tmp/pip-build-env-eluyx7cn/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 320, in _get_build_requires
          self.run_setup()
        File "/tmp/pip-build-env-eluyx7cn/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 335, in run_setup
          exec(code, locals())
        File "<string>", line 5, in <module>
        File "/tmp/pip-build-env-eluyx7cn/overlay/lib64/python3.9/site-packages/numpy/__init__.py", line 141, in <module>
          from . import core
        File "/tmp/pip-build-env-eluyx7cn/overlay/lib64/python3.9/site-packages/numpy/core/__init__.py", line 49, in <module>
          raise ImportError(msg)
      ImportError:

      IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!

      Importing the numpy C-extensions failed. This error can happen for
      many reasons, often due to issues with your setup or how NumPy was
      installed.

      We have compiled some common reasons and troubleshooting tips at:

          https://numpy.org/devdocs/user/troubleshooting-importerror.html

      Please note and check the following:

        * The Python version is: Python3.9 from "/usr/bin/python3.9"
        * The NumPy version is: "1.24.2"

      and make sure that they are the versions you expect.
      Please carefully study the documentation linked above for further help.

      Original error was: /tmp/pip-build-env-eluyx7cn/overlay/lib64/python3.9/site-packages/numpy/core/_multiarray_umath.cpython-39-x86_64-linux-gnu.so: failed to map segment from shared object

      [end of output]

  note: This error originates from a subprocess, and is likely not a problem with pip.
error: subprocess-exited-with-error

× Getting requirements to build wheel did not run successfully.
│ exit code: 1
╰─> See above for output.

note: This error originates from a subprocess, and is likely not a problem with pip.
[root@server ~]# Collecting hnswlib>=0.7
  Using cached hnswlib-0.7.0.tar.gz (33 kB)
  Installing build dependencies ... done
  Getting requirements to build wheel ... error
  error: subprocess-exited-with-error

  × Getting requirements to build wheel did not run successfully.
  │ exit code: 1
  ╰─> [51 lines of output]
      Traceback (most recent call last):
        File "/tmp/pip-build-env-eluyx7cn/overlay/lib64/python3.9/site-packages/numpy/core/__init__.py", line 23, in <module>
          from . import multiarray
        File "/tmp/pip-build-env-eluyx7cn/overlay/lib64/python3.9/site-packages/numpy/core/multiarray.py", line 10, in <module>
          from . import overrides
        File "/tmp/pip-build-env-eluyx7cn/overlay/lib64/python3.9/site-packages/numpy/core/overrides.py", line 6, in <module>
          from numpy.core._multiarray_umath import (
      ImportError: /tmp/pip-build-env-eluyx7cn/overlay/lib64/python3.9/site-packages/numpy/core/_multiarray_umath.cpython-39-x86_64-linux-gnu.so: failed to map segment from shared object

      During handling of the above exception, another exception occurred:

      Traceback (most recent call last):
        File "/usr/local/lib/python3.9/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 353, in <module>
          main()
        File "/usr/local/lib/python3.9/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 335, in main
          json_out['return_val'] = hook(**hook_input['kwargs'])
        File "/usr/local/lib/python3.9/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 118, in get_requires_for_build_wheel
          return hook(config_settings)
        File "/tmp/pip-build-env-eluyx7cn/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 338, in get_requires_for_build_wheel
          return self._get_build_requires(config_settings, requirements=['wheel'])
        File "/tmp/pip-build-env-eluyx7cn/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 320, in _get_build_requires
          self.run_setup()
        File "/tmp/pip-build-env-eluyx7cn/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 335, in run_setup
          exec(code, locals())
        File "<string>", line 5, in <module>
        File "/tmp/pip-build-env-eluyx7cn/overlay/lib64/python3.9/site-packages/numpy/__init__.py", line 141, in <module>
          from . import core
        File "/tmp/pip-build-env-eluyx7cn/overlay/lib64/python3.9/site-packages/numpy/core/__init__.py", line 49, in <module>
          raise ImportError(msg)
      ImportError:

      IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!

      Importing the numpy C-extensions failed. This error can happen for
      many reasons, often due to issues with your setup or how NumPy was
      installed.

      We have compiled some common reasons and troubleshooting tips at:

          https://numpy.org/devdocs/user/troubleshooting-importerror.html

      Please note and check the following:

        * The Python version is: Python3.9 from "/usr/bin/python3.9"
        * The NumPy version is: "1.24.2"

      and make sure that they are the versions you expect.
      Please carefully study the documentation linked above -bash: Collecting: command not found
for further help.

      Original error was: /tmp/pip-build-env-eluyx7cn/overlay/lib64/python3.9/site-packages/numpy/core/_multiarray_umath.cpython-39-x86_64-linux-gnu.so: failed to map segment from shared object

      [end of output]

  note: This error originates from a subprocess, and is likely not a problem with pip.
error: subprocess-exited-with-error```

Fixed----------------------------------

[jeffchuber]

@Giiiii0 thank you! we are looking into this

[Nathanlauga]

I have the same problem. To install it anyway I installed hnswlib using conda command (conda install hnswlib) Then pip install chromadb worked just fine.

[yapnel]

i'm facing the same issue as well. Is there a solution for it please?

[HammadB]

Closing this out, we now ship precompiled binaries #1109