Christos Efthymiou

Unable to submit ProDy job from VMD even after designating path to prody.exe

14

I would like to use the Normal Mode Wizard in VMD to conduct PCA analysis use the ProDy Interface. I am using a Windows 10 computer and the 64 bit...

Model 2 and 3 Not Created

2

## Expected Behavior In the Run Prediction step, model 1 is created without issue within approximately 450 seconds. I would expect models 2 and 3 to also be accomplished within...

How to Install BFEE2 VMD Plugin?

9

Is there a step-by-step tutorial for installing the BFEE2 VMD Plugin? I tried to install BFEE2 using conda on my Windows machine, but I am running into an issue. I...

The application was unable to start correctly (0xc000007b)

2

I am trying to use the CaFE Plugin for VMD to calculate the free binding energy for a protein-protein complex. One of the prerequisites for the plugin is APBS. I...

File Size Limit for DCD Plugin

2

I am using a Windows 10 computer and have been trying to get the program MDContactCom (https://gitlab.com/chiemotono/mdcontactcom) to run on my simulation files. I have been trying for several weeks...