Christos Efthymiou

I followed the tutorial you provided and created a symbolic link to prody.exe and it solved that problem. However, I now get an error with writepdb: ```` atomsel: writepdb failed....

Okay, please let me know if you identify any solutions as I would really like to be able to use this plugin.

I am not sure what the issue is but now I am experiencing the original error even though I designate path to ProDy by giving the symlink just as before:...

Sorry if I was unclear, but the program still is not working. When I now give the path to the symlink I created, I still get the error about how...

Yes it starts running but then immediately gives that error. Could you explain how to create/install a conda environment for prody? I am trying to go to the website http://prody.csb.pitt.edu/...

Thank you for the instructions. I still trying to get the program to work, and see the following error: ```` SyntaxError: Non-UTF-8 code starting with '\x90' in file C:\Users\Christos\anaconda3\Scripts\prody.exe on...

Yes it does, but there is severe clashing so amber is needed to prevent this.

I am experiencing this same exact problem so a solution would be much appreciated!

Thank you, using python instead of python3 fixed the problem and the interface opened. In terms of adding the extension to VMD, the only thing I can find is "Optionally,...

I also wanted to ask about how to use BFEE to calculate the free binding energy of a protein-protein interaction. When I open the GUI, I do not see an...