Christopher Schröder

Assertion error for reads without sequence

5

I get the following assertion error: ``` strling version: 0.5.0 [strling] using existing file resources/genome.dna.homo_sapiens.GRCh38.100.fasta.str for genome repeats [strling] got STR repeats from genome into an interval tree [strling] collecting...

Bioconda

4

Hey, I uploaded ExpansionHunterDenovo to Bioconda. You can now also install it via conda install -c bioconda expansionhunterdenovo Best Christo

This PR tries to unify tag and annotate (infos) into a single command "annotate", which supports annotating tags (filter), infos and new annotation for each read.

working info

3

This is a complete rework of the annotate command. The goal is to make annotate similar to filter and table, extend it by the possibility to add annotations and make...

Loci with multiple motifs at same position

4

I have called a bunch of samples with straglr and merged the (chrom, start, end, motif) beds into one unified bed. I would like to use this merged bed to...

too many resources with grouped jobs

2

**Snakemake version** 7.29.0 **Describe the bug** Grouped jobs require too many resources. **Logs** ``` (base) schroeder@mccoy:~/workspace/test$ snakemake -n -j Building DAG of jobs... Job stats: job count min threads max...